CK937628

Overview
NameCK937628
Unique NameCK937628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937628_ssr46 microsatellite CK937628_ssr46:46..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:128..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.602e-73
Identity = 141/168 (83.93%), Postives = 144/168 (85.71%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E  NGILWEVEGKWVVQGAV VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.802e-71
Identity = 134/168 (79.76%), Postives = 144/168 (85.71%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E  NG+LWEVEGKWV+QGAV VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.757e-69
Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E ENG++WEVEGKWVVQGAV VDIGANPS               KVVDIVDTFRLQEQP  DKKQF+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.579e-67
Identity = 130/168 (77.38%), Postives = 140/168 (83.33%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSF Y+E ENG+LWEVEGKWVV+GAV VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.579e-67
Identity = 128/168 (76.19%), Postives = 138/168 (82.14%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E ENG+LWEV+GKWVVQGAV V+IGANPS               +VVDIVDTFRLQEQPAFDKKQFVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLYIA  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.693e-67
Identity = 129/168 (76.79%), Postives = 138/168 (82.14%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY E ENGILWEV+GKWVVQGA+ VDIGANPS               KVVDIVDTFRLQEQP FDKKQFVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.280e-66
Identity = 126/168 (75.00%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E +NG+LWEV+GKWVVQGAV V+IGANPS               KVVDIVDTFRLQEQPAFDKKQFVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.333e-65
Identity = 129/170 (75.88%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXX--KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLL+GDELLSDSFPY+E +NG+LWEV+GKWVVQGAV VDIGANPS                 KVVDIVDTFRLQEQP FDKKQFVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 7.333e-65
Identity = 124/168 (73.81%), Postives = 135/168 (80.36%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            MLVYQDLLTGDELLSDSFPY+E ENGILWEVEGKWV  GAV V+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTFLY A  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of CK937628 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.577e-65
Identity = 126/168 (75.00%), Postives = 138/168 (82.14%), Query Frame = 2
Query:  119 MLVYQDLLTGDELLSDSFPYEETENGILWEVEGKWVVQGAV-VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 619
            M+VYQDLL+GDELLSDSFPY+E  NG+LWEVEGKWVVQGAV VDIGANPS               KVVDIVDTFRLQEQP FDKKQF+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGDEEGVKIRLV-KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of CK937628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_HEVBR5.602e-7383.93Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.802e-7179.76Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA3.757e-6976.79Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.579e-6777.38Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.579e-6776.19Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ2.693e-6776.79Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU2.280e-6675.00Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN7.333e-6575.88Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH7.333e-6573.81Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ9.577e-6575.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_A09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937628 ID=CK937628; Name=CK937628; organism=Citrus sinensis; type=EST; length=793bp
GGGGCCTCTCGCTCTCGCTCTCGCTCTCGCTCTCTCACCGCTGCGTCTCT
CTCTCTCTCTCTCCAGTTTTCTCCGTTGATTATTTTTCTTTTTTGTGTTC
GCGAGAGAGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCGGTGA
TGAGCTTCTCTCCGACTCTTTTCCCTACGAGGAAACTGAGAATGGGATTC
TGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGTTGTTGACATT
GGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGA
CCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTGCAGGAGC
AACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAAGAGATTCATC
AAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAA
GAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTC
AATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCT
TACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATTGCTGATGC
ATTGAAGGAGGTGAAGTGCTGAGCCGGGCTTCGAAGAGGAAGTGCCTGCT
GTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGT
ACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGAC
ATAAACAATATGTTTTTCTGGTAAAAAAAAAAAAAAAAAAAAA
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