CK937624

Overview
NameCK937624
Unique NameCK937624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_EHRCJ (50S ribosomal protein L25 OS=Ehrlichia canis (strain Jake) GN=rplY PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  164 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 511
            VL   V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C    I   IE+D+S+L  G  + +SD+ + P   ++ K     +  IS+T +E
Sbjct:   77 VLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGVKRGGVLNILHRTLSIKCLPNAILQNIEIDLSDLTAGHSIHVSDLNLPPEINVVMKEHNPAIVTISSTSME 192          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_EHRRW (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  164 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 502
            VL   + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   77 VLMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_EHRRG (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Gardel) GN=rplY PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  164 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 502
            VL   + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   77 VLMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_EHRCR (50S ribosomal protein L25 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplY PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  164 VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 511
            VL   V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C  + I   IE+D+S L  G  + +SD+++ P   +  K     +  IS+   E
Sbjct:   77 VLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGIKRGGVLNILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMKEHNPAIVTISSASTE 192          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_ANAMM (50S ribosomal protein L25 OS=Anaplasma marginale (strain St. Maries) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  176 KVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 502
            ++ +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   81 EIQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVIASVSAT 189          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_ANAMF (50S ribosomal protein L25 OS=Anaplasma marginale (strain Florida) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  176 KVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 502
            ++ +   +G + ++ F + D G E+KV+VP+VF   + C G+K GG L  +  SL   C  + I   +EVD+ +L IG  + +SD+ +  + ++  K E   +  +SAT
Sbjct:   81 EIQKHPVSGAVSHVDFQFVDRGAEIKVEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDLALPETMQVAMKEENPVVASVSAT 189          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_WOLWR (50S ribosomal protein L25 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 52/183 (28.42%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   41 TERKQIHSILKSVELP-------------FFCSTTFPLQIRAGSGSSVLLD---SGK-----VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLS-KNEKMPLCKISATKLENPEP 523
            T+ K +HS+ K   +P                +  F  Q ++GS S+ L++   SGK     V  I++H  ++T + ++  FV  D G+E+K+D+P+ F      PG+K GG L  +  S+   C  + I   IEVD+S   IG  + ++D+++    K ++ + E   +  ISA   +  EP
Sbjct:   17 TKTKAMHSLRKKGNIPGIIYGKGHDNVNLTLSAKEFTKQYKSGSLSAHLIELNISGKKEYALVRDIQLHVVKDTVQHVDFQFV--DKGSEIKIDIPLSFVNESKAPGIKLGGVLNVLCRSIAVKCSPDKIPQVIEVDLSGKMIGQSIHINDVKLPEGVKFVAHEEENFTIVTISAADSDVEEP 197          
BLAST of CK937624 vs. ExPASy Swiss-Prot
Match: RL25_WOLPM (50S ribosomal protein L25 OS=Wolbachia pipientis wMel GN=rplY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 52/183 (28.42%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   41 TERKQIHSILKSVELP-------------FFCSTTFPLQIRAGSGSSVLLD---SGK-----VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLS-KNEKMPLCKISATKLENPEP 523
            T+ K +HS+ K   +P                +  F  Q ++GS S+ L++   SGK     V  I++H  ++T + ++  FV  D G+E+K+D+P+ F      PG+K GG L  +  S+   C  + I   IEVD+S   IG  + ++D+++    K ++ + E   +  ISA   +  EP
Sbjct:   17 TKTKAMHSLRKKGNIPGIIYGKGHDNVNLTLSAKEFTKQYKSGSLSAHLIELNISGKKEYALVRDIQLHVVKDTVQHVDFQFV--DKGSEIKIDIPLSFVNESKAPGIKLGGVLNVLCRSIAVKCSPDKIPQVIEVDLSGKMIGQSIHINDVKLPEGVKFVAHEEENFTIVTISAADSDVEEP 197          
The following BLAST results are available for this feature:
BLAST of CK937624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL25_EHRCJ5.320e-1332.7650S ribosomal protein L25 OS=Ehrlichia canis (stra... [more]
RL25_EHRRW1.548e-1235.4050S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_EHRRG1.548e-1235.4050S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_EHRCR2.640e-1231.9050S ribosomal protein L25 OS=Ehrlichia chaffeensis... [more]
RL25_ANAMM2.235e-1131.1950S ribosomal protein L25 OS=Anaplasma marginale (... [more]
RL25_ANAMF2.919e-1131.1950S ribosomal protein L25 OS=Anaplasma marginale (... [more]
RL25_WOLWR4.979e-1128.4250S ribosomal protein L25 OS=Wolbachia sp. subsp. ... [more]
RL25_WOLPM4.979e-1128.4250S ribosomal protein L25 OS=Wolbachia pipientis w... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_C11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937624 ID=CK937624; Name=CK937624; organism=Citrus sinensis; type=EST; length=615bp
GGGCGACAGAAGATCACCGTCCAGGAAACAAATCTTATCCACCGAAAGAA
AGCAGATTCACTCCATCCTCAAGTCCGTAGAACTCCCCTTCTTTTGCTCC
ACTACTTTCCCGCTGCAGATCCGTGCCGGTTCTGGGTCGTCGGTTTTGCT
TGATTCAGGAAAAGTGCTTCCCATTAAGGTTCATAGAGATGAAGAGACTG
GGAGAATATTGAATTTGGTTTTTGTCTGGGCTGATGATGGAACGGAGTTG
AAAGTTGATGTGCCTGTTGTCTTTAAAGGAGTAGAGAGCTGTCCTGGTCT
CAAGAAAGGGGGATATTTGAAAAGTATTAGAACCAGCTTAAAATATCTGT
GCCCAGCTGAACATATTTCTCCCAAAATTGAGGTAGATGTCAGCAATCTC
GATATTGGAGATAGAGTATTCATGAGCGACATTGAGGTTCATCCATCCTG
GAAGCTTCTGAGCAAGAATGAGAAAATGCCTCTATGCAAGATCTCGGCAA
CTAAGTTGGAAAACCCAGAACCTGCAGTAATGTAGGCACTGAAGTGGAAC
TTGGGCAAGGTTTGCAGATTTATGAGTAGAATACCTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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