CX675346

Overview
NameCX675346
Unique NameCX675346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9276 contig Csv1_Contig9276:402..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675346 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 61/160 (38.12%), Postives = 98/160 (61.25%), Query Frame = -3
Query:  279 VVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVK 755
            VVGFD+EW P + +G L  K A++Q+C   + CY+  +    + P  L++LLE+  + K GVGI  D  K+ RD+++ +K   +L+ +A  K+   ++ W L SL + L+ K+L K   IR  NW    L++DQ LYAATDA+A + +Y+ L+ L + V+
Sbjct:   78 VVGFDMEWPPLYNRGKLG-KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILDDTVQ 235          
BLAST of CX675346 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 63/160 (39.38%), Postives = 97/160 (60.62%), Query Frame = -3
Query:  279 VVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVK 755
            VVGFD+EW P ++ G   R  AV+Q+C   N CY+  I    + P  L++LLE+ +I K GVGI  D  K+ RD++V +++  +L+ +A  K+   ++ W L  L + ++ K+L K   IR  NW    L++DQ LYAATDA+A   +YQ L +L + V+
Sbjct:   72 VVGFDMEWPPIYKPGKRSR-VAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQ 229          
BLAST of CX675346 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 66/178 (37.08%), Postives = 99/178 (55.62%), Query Frame = -3
Query:  225 VVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSRLDLHNC 755
            V+GFDIEW P + KG    K A++Q+C     CY+  I   +G P  L+ LLED ++ KVGVGI  D  K+  DY + +K   +LS +A  K+    +KW    L + L  ++L K    R  NW+  +L++DQ LYAATDA+A   +Y+ L+ +     DA +  + R  R  + +C
Sbjct:   72 VLGFDIEWPPVYTKGKTG-KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKLRC-KEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKLEGM-----DAHESDSFRVGREGVADC 242          
BLAST of CX675346 vs. ExPASy Swiss-Prot
Match: EXD2_HUMAN (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  291 IPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLA-KHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 629
            +P +L  +L D TILKVGVG   DA K+ +DY + V+   DL YLA + +         L SL E ++   L K   +R  NW+A+ L++DQ++YAA DA  S  L+  L   P
Sbjct:   23 LPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHLLGYP 136          
BLAST of CX675346 vs. ExPASy Swiss-Prot
Match: EXD2_MOUSE (Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus GN=Exd2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -3
Query:  240 QIIHSG--IPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLA--SLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP----EPVKDATDQGN-----QRCSRL 647
            ++I+ G  +P +L  +L D  ILKVGVG   DA K+ +DY + V+   DL YLA  K G +    GL+  SL E ++   L K   +R  NW+A+ L++DQ+ YAA DA  S  L+  L   P       +++TDQ N     +RC  +
Sbjct:   15 RLIYGGRTLPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRGCLDLRYLAM-KQGNNILCNGLSLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHLLGYPFSRDSYEEESTDQINWQKALERCRNM 162          
The following BLAST results are available for this feature:
BLAST of CX675346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WRN_HUMAN2.158e-2438.13Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
WRN_MOUSE2.819e-2439.38Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_XENLA6.280e-2437.08Werner syndrome ATP-dependent helicase homolog OS=... [more]
EXD2_HUMAN3.233e-1239.47Exonuclease 3'-5' domain-containing protein 2 OS=H... [more]
EXD2_MOUSE4.222e-1236.91Exonuclease 3'-5' domain-containing protein 2 OS=M... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61F04-L7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675346 ID=CX675346; Name=CX675346; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTAAAAAATGTTGGAACCAAATCAATATTAAAATGGAGCAAAACCA
AGAATCGAAAAAAGAAAGTGTACAAATTACATCTACATCTCACACGCTAA
ATAAATCATCATACAGTTACCTGCATCTAAGGCTTCCGTTAAACATGCTC
AATCCTATGGCAAATAATGGGGGAAGACCACCAAAATTTAATTTTATGAC
CGTATGAATTAAACTTCTGTTTTAGCAATTGTGCAAGTCTAATCTGGAAC
ATCTTTGATTTCCCTGGTCAGTAGCATCTTTAACTGGCTCTGGTAGGCTC
TTTAACACCTGATAAAGATGCCAGGAAGCAAAAGCATCTGTTGCGGCATA
CAGTAGCTGGTCCTTTGATAAAACATCTGCTTCCCAATTTCCCAGTCTGA
TTCTATTGGGCTTCTTAAGCTCCTTGCAAACAAGCATCTCGGTCAGTGAT
GCAAGACCCCATTTTTGACTATCTCCGCCAATCTTATGTTTTGCTAGATA
GGAAAGATCCTCAGAAGCTTTGACAGATACATTATAGTCTCTGTAAACTT
TACCAGCATCACTGCCTATCCCAACTCCNACTTTTAAAATTGTAGAATCT
TCAAGTAGCAGTTGCAGGCTCGGAGGGATTCCTGAATGAATAATTTGCAT
GACATAACAATGGTTGCTGTCTCCGCATATCTGCATAACTGCAGCTTTTC
TTGGTAAAACACCTTTTCTGAAAGTGGGCTTCCACTCAATGTCAAATCCA
ACAACGGCCTGACCTGCTTCACTTTTATTAGCTTCAAGAATCCGTC
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