CK937613

Overview
NameCK937613
Unique NameCK937613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.070e-77
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 573
            MAEQTEKAFLKQPKVFL+S             NRFWKS+GLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.562e-76
Identity = 139/159 (87.42%), Postives = 142/159 (89.31%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 573
            MAEQTEKAFLKQPKVFLS+             NRFWKS+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.876e-76
Identity = 138/158 (87.34%), Postives = 142/158 (89.87%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 570
            MAEQTEKAFLKQPKVFLSS             NRFWKS+GLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 5.991e-73
Identity = 133/159 (83.65%), Postives = 139/159 (87.42%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 573
            MAEQTEKAFLKQPKVFLSS             NRFWK++GLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.743e-72
Identity = 133/160 (83.12%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 573
            MAEQTEKAFLKQPKVFLSS             NRFWK++GLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.651e-72
Identity = 132/159 (83.02%), Postives = 139/159 (87.42%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 573
            MAEQTEKAFLKQPKVFLSS             NRFWK++GLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.464e-52
Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 567
            MAEQTEKAF KQ  V                 +RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R++K++GLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R++K++GLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
The following BLAST results are available for this feature:
BLAST of CK937613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES3.070e-7787.4240S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN7.562e-7687.4240S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE9.876e-7687.3440S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH5.991e-7383.6540S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH1.743e-7283.1340S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH8.651e-7283.0240S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE4.464e-5265.8240S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA4.324e-4759.0940S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT7.375e-4759.0940S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE7.375e-4759.0940S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937613 ID=CK937613; Name=CK937613; organism=Citrus sinensis; type=EST; length=702bp
GGGGCTCCGCGCTTGATCCATGGTTTTCTGNNNNNNGTTAGCCACCTCCG
CCCAGTGCGTCCATCATCCCCAACAACTCAGCCCCGAAATCCAGCCATGG
CGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGC
TCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATT
CTGGAAGAGCATGGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAG
GGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGG
GGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCAT
CATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTATG
AGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGTG
AAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTCAAAGAC
GGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTGGTGGTG
CAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCCGCTGTTTCCAACAT
TAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGGATTTTTGC
ATTGGGAATTAAATCCTTTTATGTCCTAATATATATTTTCTAGAGTAAAA
AA
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