CX675345

Overview
NameCX675345
Unique NameCX675345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9276 contig Csv1_Contig9276:28..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675345 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 65/178 (36.52%), Postives = 97/178 (54.49%), Query Frame = 2
Query:  299 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAXHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAA 829
            P M+F G I+YS  S +  + + ++R  L        + V+GFDIEW P + KG    K A++Q+C     CY+  I   +G P  L+ LLED ++ KVGVGI  D  K+  DY + +K   +LS +A  K+    +KW    L + L  ++L K    R  NW+  +L++DQ LYAA
Sbjct:   39 PFMKFNGSIVYSYESNDCSLLSEDIRSSL------LEEDVLGFDIEWPPVYTKGKTG-KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKL-RCKEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAA 208          
BLAST of CX675345 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 60/178 (33.71%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  299 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAXHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAA 829
            P + F G I+YS  +++    + ++   L          VVGFD+EW P + +G L  K A++Q+C   + CY+  +    + P  L++LLE+  + K GVGI  D  K+ RD+++ +K   +L+ +A  K+   ++ W L SL + L+ K+L K   IR  NW    L++DQ LYAA
Sbjct:   45 PFLEFTGSIVYSYDASDCSFLSEDISMSLSDGD------VVGFDMEWPPLYNRGKLG-KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKL-KCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAA 214          
BLAST of CX675345 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.022e-21
Identity = 61/178 (34.27%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  299 PAMRFGGQILYSRTSTEVEMSAIELRRILEANKSEAGQAVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAXHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAA 829
            P + F G I+YS  +++    + ++   L          VVGFD+EW P ++ G   R  AV+Q+C   N CY+  I    + P  L++LLE+ +I K GVGI  D  K+ RD++V +++  +L+ +A  K+   ++ W L  L + ++ K+L K   IR  NW    L++DQ LYAA
Sbjct:   39 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDGD------VVGFDMEWPPIYKPGKRSR-VAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKL-KCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAA 208          
The following BLAST results are available for this feature:
BLAST of CX675345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRN_XENLA5.745e-2336.52Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_HUMAN3.152e-2133.71Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
WRN_MOUSE7.022e-2134.27Werner syndrome ATP-dependent helicase homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61F04-L7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675345 ID=CX675345; Name=CX675345; organism=Citrus sinensis; type=EST; length=830bp
TGAAATTTCGCACTCCCTCCAATTTATACCCAAAATGGAAAAGAAGTCGG
TAGAAACAGAAGGGGACGACGATGAGCCCATCACGGAACAGGAACTCGAA
ATCGTTGAAGCAATAGAAGCCGCATATGAACTGTCAATCACAAGGAAAAG
ACAATTAAGTCCTCCTGTTCATAACAATCATACCCATCGCCCCATGTCCA
TAACTTCCCGCCGGTTGCCCTCTTCACTTGTTGCTTCGCCTTCTTCACCT
TCGTTTTCTCTATCACATTGCCAAGGAGCTAACATGAGGTTGAAATACCC
TGCAATGAGGTTTGGAGGTCAAATTTTGTATAGCAGAACTTCAACAGAGG
TAGAGATGTCCGCAATAGAGCTTCGACGGATTCTTGAAGCTAATAAAAGT
GAAGCAGGTCAGGCCGTTGTTGGATTTGACATTGAGTGGAAGCCCACTTT
CAGAAAAGGTGTTTTACCAAGAAAAGCTGCAGTTATGCAGATATGCGGAG
ACAGCAACCATTGTTATGTCATGCAAATTATTCATTCAGGAATCCCTCCG
AGCCTGCAACTGCTACTTGAAGATTCTACAATTTTAAAAGTTGGAGTTGG
GATAGGCAGTGATGCTGGTAAAGTTTACAGAGACTATAATGTATCTGTCA
AAGCTTCTGAGGATCTTTCCTATCTAGCANAACATAAGATTGGCGGAGAT
AGTCAAAAATGGGGTCTTGCATCACTGACCGAGATGCTTGTTTGCAAGGA
GCTTAAGAAGCCCAATAGAATCAGACTGGGAAATTGGGAAGCAGATGTTT
TATCAAAGGACCAGCTACTGTATGCCGCAA
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