CK937603

Overview
NameCK937603
Unique NameCK937603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937603_ssr536 microsatellite CK937603_ssr536:536..547. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937603_ssr673 microsatellite CK937603_ssr673:673..684. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX4_ARATH (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.381e-53
Identity = 112/179 (62.57%), Postives = 133/179 (74.30%), Query Frame = 3
Query:   21 MKVHQLARGF---WEHAEP--SLTLGCKRLRPLAPKL------PNAESTSVSS--FDLKSLIRPE-SGPRKLVSSDEKRNPP-QVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPAATASFTTTISL 512
            MKVH+ + GF   W+  +   SL+L CKRLRPLAPKL      P + S+ V+S  FDLK+ IRP+ +GP K    + KR+PP Q+ETHPGGTRWNPTQEQIGILEMLY+GGMRTPNAQQIE IT QLGKYGKIEGKNVFYWFQNHKARERQKQKRN+L    C  +   T  F  ++++
Sbjct:    1 MKVHEFSNGFSSSWDQHDSTSSLSLSCKRLRPLAPKLSGSPPSPPSSSSGVTSATFDLKNFIRPDQTGPTKF---EHKRDPPHQLETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKRNNLISLSCQSSFTTTGVFNPSVTM 176          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX4_ORYSJ (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica GN=WOX4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   60 AEPSLTLGCKRLRPLAPKLPNAESTSVSSFDLKSLIRPESGPRKLVSSDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 449
            A P+ +  C  LRPLAPK+   E         K +  P+    +  ++ +  N        G TRWNP+ EQI +LEMLYRGGMRTPN+ QIE+IT +LGKYG+IEGKNVFYWFQNHKARERQKQKR +L
Sbjct:   37 AFPAFSFKC--LRPLAPKISLPEPR-------KMIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKRAAL 157          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX4_ORYSI (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica GN=WOX4 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   60 AEPSLTLGCKRLRPLAPKLPNAESTSVSSFDLKSLIRPESGPRKLVSSDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 449
            A P+ +  C  LRPLAPK+   E         K +  P+    +  ++ +  N        G TRWNP+ EQI +LEMLYRGGMRTPN+ QIE+IT +LGKYG+IEGKNVFYWFQNHKARERQKQKR +L
Sbjct:   37 AFPAFSFKC--LRPLAPKISLPEPR-------KMIAPPDFVVPRARNASKLLNYTVQVPAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKRAAL 157          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   81 GCKRLRPLAPKLPNAESTSVSS-----FDLKSL-IRPESGPRKLVS-SDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPAATASFTTTISLD 515
            G ++LRPL P+L +  + +V++     F++  + +  E   R+L+  + E ++PP + +    +RWNPT +Q+ +LE LYR G RTP+A  I+QITAQL +YGKIEGKNVFYWFQNHKARERQK++R  +   H   T  +TAS  +    D
Sbjct:   16 GGRKLRPLIPRLTSCPTAAVNTNSDHRFNMAVVTMTAEQNKRELMMLNSEPQHPPVMVS----SRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRR-QMETGH-EETVLSTASLVSNHGFD 161          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX2_ORYSJ (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica GN=WOX2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSH 461
            TRW PT EQ+ +LE +YRGG+RTPNA QI+QITA L  YG+IEGKNVFYWFQNHKAR+RQK +R  L +SH
Sbjct:   26 TRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRR-LCISH 95          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX2_ORYSI (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica GN=WOX2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSH 461
            TRW PT EQ+ +LE +YRGG+RTPNA QI+QITA L  YG+IEGKNVFYWFQNHKAR+RQK +R  L +SH
Sbjct:   26 TRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRR-LCISH 95          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 3
Query:  252 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 446
            RW PT+EQI +LE LYR G+RTP A+QI+QITA+L ++G IEGKNVFYWFQNHKAR+RQKQK+ S
Sbjct:   44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQS 108          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 3
Query:  252 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 446
            RW PT+EQI +LE LYR G+RTP A+QI+QITA+L ++G IEGKNVFYWFQNHKAR+RQKQK+ S
Sbjct:   44 RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQS 108          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX6_ARATH (WUSCHEL-related homeobox 6 OS=Arabidopsis thaliana GN=WOX6 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.761e-22
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  138 VSSFDLKSLIRPESGPRKLVSSDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLG 452
            ++  D   LI   SG   +   + K N P   T     RWNPT EQI  LE LYR G RTP  +QI+QI ++L KYG+IEGKNVFYWFQNHKARER K++R   G
Sbjct:   29 INGNDHHQLITASSGEHDI--DERKNNIPAAAT----LRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLKRRRREGG 127          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX2_ARATH (WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.867e-21
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 449
            +RWNPT++QI +LE LY+ G+RTP+A QI+QIT +L  YG IEGKNVFYWFQNHKAR+RQKQK+  +
Sbjct:   13 SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQKQERM 79          
The following BLAST results are available for this feature:
BLAST of CK937603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
WOX4_ARATH5.381e-5362.57WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana... [more]
WOX4_ORYSJ3.177e-2953.85WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. ... [more]
WOX4_ORYSI3.177e-2953.85WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. ... [more]
WOX1_ARATH3.287e-2644.74WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana... [more]
WOX2_ORYSJ1.293e-2270.42Putative WUSCHEL-related homeobox 2 OS=Oryza sativ... [more]
WOX2_ORYSI1.293e-2270.42Putative WUSCHEL-related homeobox 2 OS=Oryza sativ... [more]
WOX5_ORYSJ2.880e-2272.31WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSI2.880e-2272.31WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX6_ARATH3.761e-2252.38WUSCHEL-related homeobox 6 OS=Arabidopsis thaliana... [more]
WOX2_ARATH1.867e-2167.16WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_F06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937603 ID=CK937603; Name=CK937603; organism=Citrus sinensis; type=EST; length=716bp
GGGGCTCCACCATGGGAAGCATGAAGGTTCATCAATTGGCACGTGGATTC
TGGGAGCATGCAGAGCCCTCTCTCACGCTTGGCTGTAAACGGTTACGCCC
TCTTGCTCCCAAGCTCCCCAACGCAGAAAGTACTAGTGTCTCTTCTTTCG
ATCTCAAGAGCCTCATTAGACCCGAAAGTGGTCCTAGAAAACTTGTGTCT
TCTGACGAGAAGAGAAATCCCCCTCAGGTGGAGACGCATCCGGGAGGCAC
AAGGTGGAATCCAACGCAGGAGCAGATAGGGATACTGGAGATGCTGTACA
GGGGAGGAATGCGAACACCGAATGCCCAACAAATAGAACAAATCACAGCG
CAGCTGGGCAAGTATGGGAAGATAGAAGGAAAGAACGTGTTCTACTGGTT
TCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGTCTTG
GTCTTAGCCATTGTCCGAGAACCCCAGCAGCCACCGCAAGTTTTACCACC
ACCATATCTCTGGACTCTAGGGAAAGAGAGGAAAGAGAAGAAGAAGAACT
CTGGAGCTCTTCCCTTTGCACCCGGAAGGCAGATGAAGGGGGTTTGATGA
GTAATTAATTGAGAAAAATTAAACTTTCGTTGAACTTTGTTCCATTATTA
ATTTTGTGATGGTGCTAGCTACAGCTAGCTAGCTACTTTGATGTGCTTTT
CTTTCTTTTCTTTGTA
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