CX675337

Overview
NameCX675337
Unique NameCX675337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675337_ssr562 microsatellite CX675337_ssr562:562..573. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675337_ssr666 microsatellite CX675337_ssr666:666..677. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO1_SOYBN (P24 oleosin isoform A OS=Glycine max PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  244 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 507
            F++ SPVLVPA +  GLA+AGFLTSGAFG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   91 FVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 174          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO2_SOYBN (P24 oleosin isoform B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  244 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 507
            FII SPVL+PA +  GLA+AGFLTSG FG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   90 FIIFSPVLIPATVAIGLAVAGFLTSGVFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 173          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO2_ARATH (Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  277 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTR--APGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ 507
            F++ SPV+VPAAL  GLA+ GFL SG FG+T LSS SW+ ++LR TR   P Q   AKRR+    G  GQK +E  Q  Q KAQ
Sbjct:   89 FLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTVPEQLEYAKRRMADAVGYAGQKGKEMGQHVQNKAQ 172          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = -3
Query:  247 DAIKGMLPERTPFKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 660
            + +KG+LPE+ P  SQ                                  +F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = -3
Query:  247 DAIKGMLPERTPFKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 660
            + +KG+LPE+ P  SQ                                  +F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLES2_BRANA (Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = -3
Query:  241 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ-----GTGTEAKESGKT 507
            F++ SPV+VPAA+  GLA+   L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  GQK +E  Q  Q KA         TE  E GKT
Sbjct:   84 FLLFSPVIVPAAITIGLAVTAILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGQKGKEMGQYVQDKAHEAHDTSLTTETTEPGKT 184          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO4_ARATH (Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  244 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQGTG-----TEAKESGK 507
            F++ SPV+VPAAL  GLA+ G L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  G K +E  Q  Q KA         TE  E GK
Sbjct:   87 FLLFSPVIVPAALTIGLAVTGILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGMKGKEMGQYVQDKAHEARETEFMTETHEPGK 186          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLES1_BRANA (Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  280 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAP-----GQAKRRVLGTA--GGQKVRETAQMTQQKA 507
            F+I SPV+VPAA V GLA+ GF+ SGA G+T LSS SW+ + +RR R        +AK+R+   A   GQ+ ++  Q  + KA
Sbjct:   72 FLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDELDEAKQRLADMAEYAGQRTKDAGQTIEDKA 154          
BLAST of CX675337 vs. ExPASy Swiss-Prot
Match: OLEO7_GOSHI (Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  268 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQ-----AKRRVLGTAG--GQKVRETAQMTQQKAQGTG 507
            F+I SPVLVPAA+   +A+AGFL+SGAFG+T LSS S++ +  R+     Q     AKR +    G  GQK +ET Q  + KA   G
Sbjct:   66 FVIFSPVLVPAAIAVFMAVAGFLSSGAFGLTGLSSLSYVFNRFRQATGTEQLDADRAKRGMQDMVGYVGQKTKETGQTIENKAHEGG 152          
The following BLAST results are available for this feature:
BLAST of CX675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
OLEO1_SOYBN8.454e-1547.73P24 oleosin isoform A OS=Glycine max PE=2 SV=2[more]
OLEO2_SOYBN1.442e-1447.73P24 oleosin isoform B OS=Glycine max PE=2 SV=1[more]
OLEO2_ARATH9.347e-1453.57Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40... [more]
OLEO2_ORYSJ1.763e-1235.17Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI1.763e-1235.17Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLES2_BRANA3.007e-1245.54Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1[more]
OLEO4_ARATH6.699e-1246.00Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE... [more]
OLES1_BRANA4.342e-1144.58Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1[more]
OLEO7_GOSHI9.673e-1145.98Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E09-J17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675337 ID=CX675337; Name=CX675337; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTTCTTCAAGATTTGCAAAAATTTATTCCAAAAAAA
GGGGGGGTAGTGATTCTTACAAACAGAGCCGCAGCACAAGGAGGAAACGA
AAAGAACGAGGGTGCATACTTATCAAAACCATTCACATAATTATTCCATT
ACATGCAACCCCACAACTTCACTAAAAAAAGACCATTCAAAAAACAAAGG
ACAGCAAAGCCCATTGGGTCATAAAAAAGGACAAAACTTATGTCTTTCCT
GATTCCTTAGCTTCCGTTCCTGTACCCTGGGCCTTTTGCTGGGTCATCTG
GGCCGTCTCCCTAACCTTCTGGCCACCCGCCGTGCCCAGCACGCGCCGCT
TCGCCTGTCCAGGGGCCCGCGTTCTCCTTAAAAAACTGGCCATCCAAGAA
AAGGAGGAGAGCGCAGTTATTCCAAAAGCACCGGAAGTCAAGAAACCGGC
AATGGCCAAGCCAGTGACGAGGGCTGCGGGCACCAAAACCGGGCTGCAAA
TTATAAAAAGCGGGGTGGCGAGAGCGAGGCAAGTGAGGGTCCCGGCCAAC
GTGAGACCAGAGAGGAGGAGGAGAGTGCCACCAACAGGCAAAAGGGTAAC
GACAGCAAGAAGTTGTGATTTAAATGGTGTCCTTTCGGGTAACATGCCTT
TGATGGCATCACTTGGCTGCTGCTGCTGTTGCTGGTAGTGCTGGGTCTGG
CGTGACTCGGCCATTGAACTGATTTTGTTGTGTTTTTGCTTTTGCAGTAC
TGATTATC
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