CX675336

Overview
NameCX675336
Unique NameCX675336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675336_ssr91 microsatellite CX675336_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675336 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 3.260e-90
Identity = 158/231 (68.40%), Postives = 180/231 (77.92%), Query Frame = 1
Query:    4 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHXXXXXXXXRLALPGPEE 696
            K K  +V KE++  FDWD LRR+ +A  G +E+   T D++DW+A+R ADV ++A TIK RGMN+ LA RI+ FL+RLV+DHGS+DLEWLRDVPPDKAKEYLLSF GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV                  +LESIQKYLWPRLCKLDQ+TLYELHYQMITFGKVFCTKSKPNCNACPM+GECRH        RLALP  E+
Sbjct:  843 KEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEK 1073          
BLAST of CX675336 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 4.708e-89
Identity = 161/257 (62.65%), Postives = 188/257 (73.15%), Query Frame = 1
Query:   34 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHXXXXXXXXRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVG 804
            K+    WDSLR+ VE N G++ER ++  DS+D+EA+R A +++I+  IKERGMNNMLA RIKDFL R+V DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR+GWV                  VLESIQK+LWPRLCKLDQRTLYELHYQ+ITFGKVFCTKS+PNCNACPMRGECRH        RLALP PEE+++ SA         P + I  + LPL     L  G
Sbjct: 1444 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASG 1700          
BLAST of CX675336 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.869e-75
Identity = 147/255 (57.65%), Postives = 174/255 (68.24%), Query Frame = 1
Query:    4 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHXXXXXXXXRLALPGPEEKAIVSANENRTNTQNPAMMINQLP 768
            KSK +  S +K++  DWDSLR++ E+ G K+ER E T D++DW+A+RC DV+KIAN I +RGMNNMLA RIK FLNRLV  HGS+DLEWLRDVPPDKAKEYLLS  GLGLKSVECVRLL+LH +AFPVDTNVGRIAVRLGWV                   L+ +   L   L +     LYELHY MITFGKVFCTK KPNCNACPM+ ECRH        RLALP PEE    S   +   ++   +++N  P
Sbjct:  776 KSKESAKSTQKKS-VDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVP------------------LQPLPDELQMHLLE-----LYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFRP 1006          
BLAST of CX675336 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.692e-60
Identity = 119/233 (51.07%), Postives = 146/233 (62.66%), Query Frame = 1
Query:    1 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVSDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHXXXXXXXXRLALPGPEEK 699
            +K K+ +    +    DW++LRR     G    RPE   DS++W  VR +  N +  TIK+RG   +L+ RI  FLN  V+ +G++DLEWLR+ P    K YLL   G+GLKS ECVRLL L H AFPVDTNVGRIAVRLG V                   ++SIQKYLWPRLCKL Q TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC++        ++ L  PEEK
Sbjct:  485 AKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEK 714          
The following BLAST results are available for this feature:
BLAST of CX675336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ROS1_ARATH3.260e-9068.40Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DME_ARATH4.708e-8962.65Transcriptional activator DEMETER OS=Arabidopsis t... [more]
DML2_ARATH3.869e-7557.65DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH2.692e-6051.07DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E08-J15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675336 ID=CX675336; Name=CX675336; organism=Citrus sinensis; type=EST; length=843bp
TCAAAATCAAAAAGTACAAGGGTCAGCAAGGAGAAACAAAATGACTTTGA
CTGGGACAGCTTAAGGAGACAGGTGGAAGCAAATGGAGGGAAGAAAGAAA
GACCAGAACATACCAAGGACTCATTGGATTGGGAAGCTGTAAGATGTGCT
GATGTTAATAAGATTGCCAACACCATCAAGGAACGTGGTATGAACAACAT
GCTTGCTGGACGAATAAAGGATTTTCTTAACCGCCTGGTTAGTGACCATG
GAAGTGTGGATCTTGAATGGCTTAGAGATGTTCCACCAGACAAAGCAAAA
GAGTATCTACTAAGCTTTCGGGGACTGGGCTTGAAAAGTGTGGAGTGTGT
GCGACTTCTAACACTTCACCATCTTGCTTTTCCAGTTGACACAAATGTTG
GACGTATAGCTGTAAGACTCGGCTGGGTGCCACTTCAGCCACTGCCTGAG
TCGCTTCAGTTGCATCTTCTAGAACTGTATCCAGTGCTGGAATCCATTCA
AAAATATCTATGGCCTCGACTGTGCAAACTTGACCAAAGAACACTGTATG
AGCTGCATTACCAGATGATAACATTTGGAAAGGTCTTCTGTACAAAAAGC
AAACCAAACTGCAATGCATGTCCAATGAGAGGAGAATGCAGGCATTTTGC
AAGTGCATTTGCAAGCTCAAGACTTGCACTTCCAGGGCCGGAGGAGAAAG
CAATAGTGAGTGCAAATGAAAATAGAACAAATACCCAAAATCCTGCAATG
ATGATCAATCAACTACCTCTTCCTCTAACTCATGCAACCGATCTACCAGT
CGGAAAATAGAAATTGCTGTTAATAACTGTGAGCCTATCATTG
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