CK937533

Overview
NameCK937533
Unique NameCK937533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:513..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.644e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDMKKLEEAVR VQMEGL W ASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEPINE+VQSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.228e-36
Identity = 73/87 (83.91%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VL+D+KPWDDETDMKKLEEAVR +QMEGL W ASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.604e-36
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VL+D+KPWDDETDMKKLEEAV+ +QMEGL W ASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 4.666e-36
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDM KLEEAVR V+MEGLLW ASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+QSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.358e-35
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDM KLEEAVR V+MEGLLW ASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.159e-35
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDM KLEEAVR ++M+GLLW ASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDMKKLEEAVR VQ EGL   ASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.501e-34
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLL+VKPWDDETDMKKLEEAVR VQM GL W ASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+QS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 71/87 (81.61%), Postives = 75/87 (86.21%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VL+DVKPWDDETDMKKLEEAVRGV+M GL W ASKL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+QSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.730e-34
Identity = 73/87 (83.91%), Postives = 76/87 (87.36%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VL+D+KPWDDETDMKKLEEAVR VQMEGL W ASKL PVGYGIKKLQIMLTI+DDL S  T IEE L E PINEYVQSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of CK937533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ2.644e-3991.95Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH1.228e-3683.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.604e-3682.76Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ4.666e-3683.91Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.358e-3582.76Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR5.159e-3581.61Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU8.801e-3585.06Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B1_ARATH1.501e-3482.76Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B2_ARATH1.961e-3481.61Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT9.730e-3483.91Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937533 ID=CK937533; Name=CK937533; organism=Citrus sinensis; type=EST; length=626bp
GGGAGAGGAAAAGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCAT
CAGCCAAAAAGAAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAG
CCTTGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAGG
TGTTCAGATGGAAGGATTACTCTGGAGAGCCAGCAAACTTGCACCTGTTG
GATATGGTATCAAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTG
GTGTCTGTTGACACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAA
TGAATATGTCCAGAGCTGCGATATTGTAGCCTTCAACAAAATCTAATTTG
TGGATCCTTTGGCAAAGTGGGTGCTAGAGAGGCTTCCGGGGATTTTGTCT
TGGATAATGATCATAGCAAAGTGATATTTATTTTATAATTTTTATTTTTG
TTTCAGGAGTCTTGTGTGTTCCATTATGGATTTGTTCTTCTATGGATGCT
GTCTCTTCGGAGTTTTTTAACTGTGACTGAAGTTGGTATGCTATATCTGC
AATGCAGAACTCTTTAGAGCATTAATGATTGAGAGCGGCTTTGCCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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