CX675326

Overview
NameCX675326
Unique NameCX675326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:20..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675326 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  331 KDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 672
            K K E  +     A  K+ A  KA K + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D             K++YEK M AYN
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of CX675326 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  331 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 654
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT              K +YEK + AYN
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of CX675326 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 56/126 (44.44%), Postives = 71/126 (56.35%), Query Frame = -1
Query:  331 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 705
            MK  + KGA K D    VK                SK + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++             KL+Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of CX675326 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.197e-18
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  331 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 642
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++             K +YE  + AYN
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of CX675326 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.894e-18
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = -1
Query:  331 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 705
            MK  + KGA K D    VK     + G  K   K  K           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++             K +Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of CX675326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.507e-2250.88HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI9.528e-2249.07HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE1.987e-1944.44DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA2.197e-1847.17HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT4.894e-1843.20HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E03-J5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675326 ID=CX675326; Name=CX675326; organism=Citrus sinensis; type=EST; length=765bp
ACTATATATAAAACATTACTCAAAACAGTAGGAATATATGCAGACTGCAG
GCGAATGCAGTACCAGCATTACATTACAAGTTGGCAGAACGAAGAGTTGA
ATTCTTTTATAGTTAAAAACACAAAATAACCCAACTGCATGGTCATACAA
CGTCCAGGATTTTTTCTGGATAAAGCAAAGGAACTATACCCAGTAGCGCT
CCTGAATCTAGTCGTCGTCCTCCTCTTCATCCTCCTCTTCAAGTTCTTCA
TCATCGTCGTCGTCATGCACCTCGGATTTTGACTTCTCAGACTCCTCTTC
ATCTTCATCTTCAGTACTTTCCTGTTTCTTGTTGTATGCTGTCATCAGCT
TTTCATAATCCAATTTCCTTTTTGCTGCTTTTGCTTCAAATGGGGCTTTT
TCTGCATCAGTCAGCGACTTCCATTTCTCTCCCCCAGCTTTCCCCACAGC
TGAGACAGCTTTAACATTGGGATGCTCTTGTTTGTAAACCTTTCTGAACT
CTTCTAGGAAAACAAAAAAAGCACTAGGAGGCCTCTTCGGCTTGTTAGGG
TCTTTCTTTGCTGACTTGACATTCTTGGTGCGCTTGTTGCTACTCTTACT
AGCTTTAAGCACAGCCTTTCGCTTTCCTGCAGCTCTGTCCTCAACAGGCT
TCACTACTTCATTTTTGTCCTTCTTGACTGCTCCTTTGCCCCTGGTAACC
TTCATTTTCAGAAGCGATATGCCTGGACGTAGAGAAGAGAGGCGAAGAAC
ACAAAAGCAGAGCCG
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