CX675325

Overview
NameCX675325
Unique NameCX675325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675325 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.525e-22
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   95 KDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 436
            K K E  +     A  K+ A  KA K + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D              ++YEK M AYN
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of CX675325 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.596e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  113 VKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 436
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT                +YEK + AYN
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of CX675325 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.001e-19
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   62 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 436
            MK  + KGA K D    VK                SK + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++              L+Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of CX675325 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  125 EDRAAGKRKAVLKASKSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 436
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++               +YE  + AYN
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of CX675325 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   62 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASKSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 436
            MK  + KGA K D    VK     + G  K   K  K           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++               +Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of CX675325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.525e-2250.00HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI9.596e-2248.15HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE2.001e-1943.65DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA2.212e-1846.23HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT4.928e-1842.40HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E03-J5-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675325 ID=CX675325; Name=CX675325; organism=Citrus sinensis; type=EST; length=769bp
TCGGCTCTGCTTTTGTGTTCTTCGCCTCTCTTCTCTACGTCCAGGCATAT
CGCTTCTGAAAATGAAGGTTACCAGGGGCAAAGGAGCAGTCAAGAAGGAC
AAAAATGAAGTAGTGAAGCCTGTTGAGGACAGAGCTGCAGGAAAGCGAAA
GGCTGTGCTTAAAGCTAGTAAGAGTAGCAACAAGCGCACCAAGAATGTCA
AGTCAGCAAAGAAAGACCCTAACAAGCCGAAGAGGCCTCCTAGTGCTTTT
TTTGTTTTCCTAGAAGAGTTCAGAAAGGTTTACAAACAAGAGCATCCCAA
TGTTAAAGCTGTCTCAGCTGTGGGGAAAGCTGGGGGAGAGAAATGGAAGT
CGCTGACTGATGCAGAAAAAGCCCCATTTGAAGCAAAAGCAGCAAAAAGG
AAATTGGATTATGAAAAGCTGATGACAGCATACAACAAGAAACAGGAAAG
TACTGAAGATGAAGATGAAGAGGAGTCTGAGAAGTCAAAATCCGAGGTGC
ATGACGACGACNATGATGAAGAACTTGAAGAGGAGGATGAAGAGGAGGAC
GACGACTAGATTCAGGAGCGCTACTGGGTATAGTTCCTTTGCTTTATCCA
GAAAAAATCCTGGACGTTGTATGACCATGCAGTTGGGTTATTTTGTGTTT
TTAACTATAAAAGAATTCAACTCTTCGTTCTGCCAACTTGTAATGTAATG
CTGGTACTGCATTCGCCTGCAGTCTGCATATATTCCTACTGTTTTGAGTA
ATGTTTTATATATAGTCCT
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