CK937418

Overview
NameCK937418
Unique NameCK937418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937418 vs. ExPASy Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.117e-35
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:  265 WVNATKFLTGASAVGSIAIPVILKHAGVIGWGALAMELSSFFVLVLAIMCY--IGMSEDDDYSIL 453
            W+NA KFLTGASAVGS+AIP ILKHAG+IGWGALA++LSS+ V ++AI+ Y  IG + D+ YS +
Sbjct:   76 WINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGDASDNYYSYI 140

HSP 2 Score: 83.5741 bits (205), Expect = 4.117e-35
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  125 MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLT 262
            MAD+PGY+R CL  GK+AFLAILVS GIVLQILACAL+NNWWPML+
Sbjct:    1 MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46
The following BLAST results are available for this feature:
BLAST of CK937418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VSP55_ARATH4.117e-3564.62Vacuolar protein sorting-associated protein 55 hom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004510_A01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937418 ID=CK937418; Name=CK937418; organism=Citrus sinensis; type=EST; length=735bp
GGGGAAATTAAATACCNNNNTTAATGTCTTGTGGTTTCCAGGNNNGCAGT
GTAGGACTTGCAGATTTCCAAATTCCAAACTCAAATTGAGGTGCCCCCTT
GTATGCTGCAAGGCTAGTGGGGTGATGGCAGACTTACCAGGTTATATGCG
TGCTTGCCTGCACACTGGGAAACTAGCTTTCTTAGCAATTTTGGTTTCTG
GAGGAATTGTACTGCAGATTCTGGCATGCGCATTGTACAATAATTGGTGG
CCAATGCTCACTGCTGGGTCAACGCAACCAAGTTCTTGACTGGAGCTTCT
GCGGTTGGAAGCATTGCAATACCAGTTATCTTAAAGCATGCAGGGGTTAT
TGGATGGGGAGCACTGGCAATGGAGCTTTCATCTTTTTTCGTACTTGTAC
TGGCCATAATGTGTTATATTGGCATGAGTGAGGATGATGATTACAGTATA
CTCTGAGATACTGCTGACTTTGGTGCTCAGGTCATTACTGTACAGAAGTG
TCAATGTTAGTTACAATCATCTGATGGCTTTTCTTTCTCCATTTGTGAAC
CTCACATCCTCTCTTTTCGTCTTACCAAGGGAGAAGAATTTGCCTTTAAT
GGATGAAATTCTTTGTCTATATTGATTTTGTCCCGAGCTACAATGTACTT
CATAATTTTTGTCATCCGAATTATCAATTGAAATTGGATTGTGGTGTAGT
GTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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