CK937399

Overview
NameCK937399
Unique NameCK937399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3493 contig Csv1_Contig3493:316..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937399 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.643e-18
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2 
Query:    2 RQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 139
            RQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:   53 RQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98
[Close]
BLAST of CK937399 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.362e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2 
Query:    2 RQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 142
            RQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:   50 RQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96
The following BLAST results are available for this feature:
BLAST of CK937399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT3_ORYSJ3.643e-1891.30Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH2.362e-1787.23Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004510_C05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937399 ID=CK937399; Name=CK937399; organism=Citrus sinensis; type=EST; length=321bp
TCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTCTTGTTTGATGGGCGGA
GACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGATGGAGGATGGAGAT
GAAATTGATGCAATGCTGCATCAGACTGGAGGTGCGCTTGGAAGCGGTTA
GCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGACTTGATGTTTGAGT
TTTTTAAATTAGCCTATATCTATGGAAATATTACTGTAAATGATGACTTG
GATCTTATAATTAACTTGAATTTAAGTCATGGTTTATTAGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
back to top