CK937394

Overview
NameCK937394
Unique NameCK937394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8610 contig Csv1_Contig8610:556..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.040e-21
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 282
            GV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   86 GVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.621e-19
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 261
            GV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:   81 GVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 222
            GVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:  122 GVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 243
            GVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:  119 GVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDY--------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS 285
            GV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KEDS+   S+S
Sbjct:   86 GVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISSIS 187          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDYQ------GYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKEDSV 267
            GV GI+    LG W F+S++   + +      GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E++V
Sbjct:   87 GVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
BLAST of CK937394 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 GVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 210
            GV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:   84 GVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
The following BLAST results are available for this feature:
BLAST of CK937394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH5.040e-2152.13Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.621e-1951.72Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH6.811e-1851.35Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH2.862e-1648.15Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD13_ARATH1.018e-1336.89Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH4.728e-1134.38Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
NUD16_ARATH6.175e-1140.79Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004510_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937394 ID=CK937394; Name=CK937394; organism=Citrus sinensis; type=EST; length=594bp
GGGGTAACTGGCATCGTTGAGTGTGAATTATTGGGTGAATGGAATTTCAA
GAGCAGAGCACACAACACTGACTATCAAGGATACATGTTCCCATTACTTG
TTCAGGATCAATTAGCGGAGTGGCCAGAGAAGAATGTGCGAAGCAGAAAA
TGGATGAGCGTGGCAGAAGCTAGAAAAGTTTGTCAGCATTGGTGGATGAA
GGAAGCATTGGATAGACTAGTAATGCGTCTAACTTCTCAACAACTACATG
GCAAGGAAGATTCTGTAGGAACCTGTTCTTTGAGCTAGAATAGAAAATCC
CACTTGTACATAGAAAATTTTCGAAGACCAGAGGGAAGTTGCTCTAAGAC
CACAAGAAGTACAGATCCAAGCGAACAAGAAACAGTGACAACACTGAAGG
ATACAGATAACGGAAGTCTGCATTTTTAATTGTTGTTTCATTTGCTTGGT
ATTCTAATTCAGAAACTTCTGTGTGGGAAAATAGGAAAGGTTAGCACAGG
CTTGTTGACAATGTTTAGAACAAACATTGGTTCTAGAAATAAAGAATGAT
GAGGTTCTGATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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