CK937348

Overview
NameCK937348
Unique NameCK937348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.633e-49
Identity = 99/182 (54.40%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  172 TRKNNSSNTNDEHIAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            +RKN+  N N+ H A         +++ SCS+T YP+LCFSA++  P A+  KV S KDVI +SLN+T TAV+HNYF I+KL+  +++ LTKREK +LHDCLE +DETLDEL+K   +L+ YP   N KS+++ AD+LK L+SAAMTNQ TCLDGFSH+ A+K +R+ L +GQ+HV  MCSN
Sbjct:   53 SRKNSGDNGNEPHHA---------ILKSSCSSTRYPDLCFSAIAAVPEAS-KKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL--KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP---NKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSN 219          
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.633e-49
Identity = 99/182 (54.40%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  172 TRKNNSSNTNDEHIAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            +RKN+  N N+ H A         +++ SCS+T YP+LCFSA++  P A+  KV S KDVI +SLN+T TAV+HNYF I+KL+  +++ LTKREK +LHDCLE +DETLDEL+K   +L+ YP   N KS+++ AD+LK L+SAAMTNQ TCLDGFSH+ A+K +R+ L +GQ+HV  MCSN
Sbjct:   53 SRKNSGDNGNEPHHA---------ILKSSCSSTRYPDLCFSAIAAVPEAS-KKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL--KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP---NKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSN 219          
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.587e-47
Identity = 99/178 (55.62%), Postives = 131/178 (73.60%), Query Frame = 1
Query:  187 SSNTNDEH-IAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            +S  N++  ++  +HA    V+R SCS+T YPELC SA+ TA      ++ S KDVI  S+NLTITAV+HNYF +KKLI  RK  LT REKT+LHDCLE +DETLDEL++T  +L  YP     K++ E A +LK L+S+A+TNQETCLDGFSH+ ADK++R+ L++GQ+HV HMCSN
Sbjct:   42 ASKANEKRTLSPSSHA----VLRSSCSSTRYPELCISAVVTAGGV---ELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKG-LTPREKTALHDCLETIDETLDELHETVEDLHLYPT---KKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSN 208          
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.423e-46
Identity = 94/180 (52.22%), Postives = 129/180 (71.67%), Query Frame = 1
Query:  178 KNNSSNTNDEHIAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            K++S N++D        + A  +++ +CS TL+PELC+SA+      +  KV S KDVI LSLN+T+ AV+ NY+A+K+LI TRK  LT REK +LHDCLE +DETLDEL+    +L+ YP   N KS+ E  ++LK L+S+A+TNQETCLDGFSH+ ADKK+R+ L++GQ HV  MCSN
Sbjct:   43 KSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFS-KKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKG-LTPREKVALHDCLETMDETLDELHTAVEDLELYP---NKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSN 217          
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.582e-44
Identity = 94/182 (51.65%), Postives = 128/182 (70.33%), Query Frame = 1
Query:  172 TRKNNSSNTNDEHIAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            T  N + N     +++ +HA    +++  CS+TLYPELCFSA++   A    ++ S K+VI  SLNLT  AV+HNYFA+KKLI  RK  LT RE T+LHDCLE +DETLDEL+    +L  YP     KS+ + AD+LK L+S+A+TNQ TCLDGFS++ AD+K+R+ L++GQ+HV HMCSN
Sbjct:   41 TTTNQNKNQKITTLSSTSHA----ILKSVCSSTLYPELCFSAVA---ATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKG-LTPREVTALHDCLETIDETLDELHVAVEDLHQYP---KQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSN 211          
BLAST of CK937348 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 52/169 (30.77%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  211 IAAHAHAYAQPVIRFSCSATLYPELCFSALSTAPAAAVSKVNSPKDVIRLSLNLTITAVQHNYFAIKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSN 717
            +AA + A A   I+ SC+ T YP +C  +LS   A A +  N+P+++   +L +++T  Q     +K+L   +   L  R+  ++HDCLE V+++LD + ++  E++    A  N     +   ++  VSAA+T++ TC+DGF+ +  D KI+E +    + V  + SN
Sbjct:   17 LAAASAAPANQFIKTSCTLTTYPAVCEQSLS---AYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRL--NKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGN-DFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSN 179          
The following BLAST results are available for this feature:
BLAST of CK937348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PME3_CITSI1.633e-4954.40Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.633e-4954.40Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH7.587e-4755.62Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PMEU1_SOLLC6.423e-4652.22Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME2_ARATH1.582e-4451.65Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
21KD_DAUCA2.015e-1530.7721 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004511_A03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937348 ID=CK937348; Name=CK937348; organism=Citrus sinensis; type=EST; length=719bp
GGGGAGTCCTCCTCTCACTCTATATACATGCTCCATCCATGTTTCAACTT
AATCACACGAAACCAAGCCTTATCAACAAAAATCTTTACCACAATGGCAC
AACCCAGAAAGCTTTTCTTGGCTCTCTTTGCAGTAGTCCTCGTAGTCACT
GCCGTTGTCACTATAATTGCCACCAGAAAGAACAACTCTAGCAACACAAA
TGATGAGCACATTGCGGCTCATGCTCATGCTTACGCTCAACCAGTTATCA
GATTCTCCTGCAGTGCCACATTGTACCCAGAGCTATGCTTCTCAGCACTC
TCCACAGCTCCAGCTGCTGCAGTGTCAAAAGTGAACAGCCCAAAAGATGT
GATACGACTGTCGCTCAACCTTACCATCACTGCAGTTCAACACAACTACT
TCGCCATCAAGAAACTCATCACCACTCGCAAGAGCACGCTCACGAAGCGT
GAGAAGACTTCACTACACGACTGTCTCGAAATGGTCGACGAAACTCTCGA
CGAGCTTTACAAAACTGAACATGAGCTTCAGGGTTATCCTGCAGCAGCTA
ATAACAAGTCGATAGCTGAACAAGCTGATGAGTTAAAGATCCTTGTGAGT
GCTGCAATGACTAATCAAGAAACTTGCCTTGATGGGTTCTCCCACGAGCG
CGCTGATAAAAAGATCCGTGAAGAATTAATGGAGGGTCAAATGCACGTGT
TTCACATGTGCAGCAATGC
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