CK937285

Overview
NameCK937285
Unique NameCK937285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937285_ssr58 microsatellite CK937285_ssr58:58..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4913 contig Csv1_Contig4913:147..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937285 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.036e-41
Identity = 90/135 (66.67%), Postives = 109/135 (80.74%), Query Frame = 2 
Query:  101 MAATSVCAAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMLGNINEGKGIFAPVVVLTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 475
            MAA S+ A G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PM+ N+NEGKG+FAP+VV+TRN++GKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of CK937285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH9.036e-4166.67Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004511_H09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937285 ID=CK937285; Name=CK937285; organism=Citrus sinensis; type=EST; length=659bp
GGGGACAAACAAGCTAGCAAACCCTCTGAGCCTCCTTCACTGAAAGCACA
AGCTATTTGTGTGTGTGTGTGTGCGCGCGTGCGTGTTGAGCGTTTCAATT
ATGGCTGCTACATCAGTATGTGCAGCTGGGTTATCATCTTCGTTTCATGG
AAGCTGGGGAGCTTCGTTTGCTAATGGTGGTGAAGAATACAGGATGTTGG
CAAGATCAGTGCCGAATGTTAGAGTGGCAAGACCCATTAGAATGCAACCG
ATGTTGGGGAACATTAATGAAGGCAAAGGCATTTTTGCTCCTGTTGTTGT
TCTCACTCGTAATATCATTGGCAAGAAGAGGTTCAATCAGCTTAGGGGCA
AAGCTATTGCCTTGCATTCTCAGGTAATTACTGAATTCTGCAAATCAATA
GGAGCTGATGCAAAGCAAAGGCAAGGCCTCATCCGTTTGGCTAAGAAGAA
TGGAGAAAGACTTGGCTTCCTTGCATGATAAGAAAGACATTTATTGTTTT
GTGTTGTTATCACCATGAGATGTTTTAAGTTTATAGTTTTTTCAAGTGCT
TTCTAATGTAAACGTACTTTTCTTCAGCTGGGTGCGTCCCAGAAATAGAA
TGTAACCTAAGATTAATCCATCCTCTTCTACAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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