CK937280 | Citrus Genome Database

Overview


Name	CK937280
Unique Name	CK937280
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	600

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1946	contig	Csv1_Contig1946:660..1259.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_CITSI (Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 2.546e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK
Sbjct:  228 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 425

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_AESPA (Maturase K OS=Aesculus pavia GN=matK PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 1.720e-85
Identity = 157/198 (79.29%), Postives = 171/198 (86.36%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  +L+E+ YFYGKVE LVEVFA DFQDIL L KDP MHYVRYQGK ILASKDTPLLMNKWKYYLV LWQWHF    Q GRV +NHLY  K  INFLGYLS  RLN+L+VRSQMLEN+FLIDN+MKK +TT+PII LIGSLTKARFCN LGHPISK TW+D SDSH+IDRFVRICRNLSHY+SGSSKKK
Sbjct:  235 NQSSHLRSTSSGLLLEQIYFYGKVEDLVEVFANDFQDILWLFKDPIMHYVRYQGKCILASKDTPLLMNKWKYYLVNLWQWHFRVWFQLGRVHINHLY--KDYINFLGYLSIGRLNTLVVRSQMLENAFLIDNAMKKFETTLPIIPLIGSLTKARFCNPLGHPISKLTWADSSDSHIIDRFVRICRNLSHYHSGSSKKK 430

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_PLETI (Maturase K OS=Pleiogynium timorense GN=matK PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.535e-85
Identity = 153/198 (77.27%), Postives = 169/198 (85.35%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  + +ER YFY KVEHLV+V A DFQDIL L KDPFMHYVRYQGKSILASKD PL+MNKWKYYL+ LWQWHFH  S+PGRV + H Y  K++IN LGYL  VRLN L+VRSQMLENSF+IDN+MKK DTTVPII LIGSLTKARFCN L HPISK T +D SDSH+IDRFVRICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRSTSSGIFLERIYFYRKVEHLVQVLANDFQDILWLFKDPFMHYVRYQGKSILASKDRPLVMNKWKYYLIHLWQWHFHMWSEPGRVHIKHFY--KHSINCLGYLFSVRLNPLVVRSQMLENSFIIDNAMKKFDTTVPIIPLIGSLTKARFCNTLXHPISKPTRADSSDSHIIDRFVRICRNLSHYHSGSSKKK 423

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_KOEPA (Maturase K OS=Koelreuteria paniculata GN=matK PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.901e-84
Identity = 153/198 (77.27%), Postives = 172/198 (86.87%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  VL ER +FYGKV +LVEVFA DFQ+IL L KDPF HYVRY+GK+ILASKDTPLLMNKWKYYLV LWQWHFH  SQPGRV +NHL+  KY+INFLGYLS  RLN+L+VRSQMLEN+FLI+N MKK +T VPII LI SLTKARFCN L +PISK TW+D SDSH+I+RFVRICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRSTSSGVLFERIHFYGKVNYLVEVFANDFQNILWLFKDPFXHYVRYRGKAILASKDTPLLMNKWKYYLVNLWQWHFHVWSQPGRVHINHLH--KYSINFLGYLSRGRLNTLVVRSQMLENAFLIENVMKKFETAVPIISLIESLTKARFCNPLXNPISKPTWADSSDSHIINRFVRICRNLSHYHSGSSKKK 423

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACECA (Maturase K OS=Acer campestre GN=matK PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 7.989e-83
Identity = 150/198 (75.76%), Postives = 169/198 (85.35%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  +L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRSTSSGLLFERISFYGKVEDLVQVFVNDFQDNLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGSSKKK 423

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACEPM (Maturase K OS=Acer palmatum GN=matK PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.043e-82
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  +L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  INFLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICR LSHY+SGSSKKK
Sbjct:  230 NQSSHLRSTSSGLLFERISFYGKVEDLVQVFVNDFQDNLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYINFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTMARFCNSLGHPISKPTWADSSDSYIIDRFMRICRKLSHYHSGSSKKK 425

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACEOP (Maturase K OS=Acer opalus GN=matK PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.043e-82
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS   L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGSSKKK
Sbjct:  230 NQSSHLRSTSSGPLFERISFYGKVEDLVQVFVNDFQDYLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGSSKKK 425

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACEMO (Maturase K OS=Acer monspessulanum GN=matK PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.043e-82
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS   L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGSSKKK
Sbjct:  230 NQSSHLRSTSSGPLFERISFYGKVEDLVQVFVNDFQDYLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGSSKKK 425

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACEPS (Maturase K OS=Acer pseudoplatanus GN=matK PE=3 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.780e-82
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS  +L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  I FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGSSKKK
Sbjct:  233 NQSSHLRSTSSGLLFERISFYGKVEDLVQVFVNDFQDNLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIYFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGSSKKK 428

[Close]

BLAST of CK937280 vs. ExPASy Swiss-Prot
Match: MATK_ACEPL (Maturase K OS=Acer platanoides GN=matK PE=3 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.780e-82
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 3

Query:    6 NQSSHLQSTSFQVLVERTYFYGKVEHLVEVFAKDFQDILGLVKDPFMHYVRYQGKSILASKDTPLLMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGSSKKK 599
            NQSSHL+STS   L ER  FYGKVE LV+VF  DFQD L L K P MHYVRYQGKS+LASKD PLLMNKWKYYLV LWQWHFH  SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +TTVPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGSSKKK
Sbjct:  228 NQSSHLRSTSSGPLFERISFYGKVEDLVQVFVNDFQDNLWLFKHPIMHYVRYQGKSVLASKDMPLLMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGSSKKK 423

The following BLAST results are available for this feature:

BLAST of CK937280 vs. ExPASy Swiss-Prot

BLAST of CK937280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
MATK_CITSI	2.546e-113	100.00	Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1	[more]
MATK_AESPA	1.720e-85	79.29	Maturase K OS=Aesculus pavia GN=matK PE=3 SV=1	[more]
MATK_PLETI	6.535e-85	77.27	Maturase K OS=Pleiogynium timorense GN=matK PE=3 S...	[more]
MATK_KOEPA	1.901e-84	77.27	Maturase K OS=Koelreuteria paniculata GN=matK PE=3...	[more]
MATK_ACECA	7.989e-83	75.76	Maturase K OS=Acer campestre GN=matK PE=3 SV=1	[more]
MATK_ACEPM	1.043e-82	75.76	Maturase K OS=Acer palmatum GN=matK PE=3 SV=1	[more]
MATK_ACEOP	1.043e-82	75.76	Maturase K OS=Acer opalus GN=matK PE=3 SV=1	[more]
MATK_ACEMO	1.043e-82	75.76	Maturase K OS=Acer monspessulanum GN=matK PE=3 SV=...	[more]
MATK_ACEPS	1.780e-82	75.76	Maturase K OS=Acer pseudoplatanus GN=matK PE=3 SV=...	[more]
MATK_ACEPL	1.780e-82	75.76	Maturase K OS=Acer platanoides GN=matK PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004512_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_A12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937280 ID=CK937280; Name=CK937280; organism=Citrus sinensis; type=EST; length=600bp
GGGGTAACCAATCGTCTCATTTACAATCAACATCCTTTCAAGTCCTCGTT
GAGCGAACGTATTTCTATGGAAAAGTCGAACATCTTGTCGAAGTCTTTGC
TAAAGATTTTCAGGACATCTTAGGGTTGGTCAAGGATCCTTTCATGCATT
ATGTTAGATATCAAGGAAAATCCATTTTGGCTTCAAAGGATACGCCTCTT
CTGATGAATAAATGGAAATATTACCTTGTCGGTTTATGGCAATGGCATTT
TCACGCGTCTTCTCAACCAGGAAGGGTTCAGCTAAACCACTTATACTTAG
GCAAGTACGCTATTAACTTTCTGGGCTATCTTTCCGGTGTGCGACTAAAT
TCTTTGTTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGATAA
TTCTATGAAGAAGGTCGATACGACCGTTCCAATTATTCATCTGATTGGAT
CATTGACTAAGGCGCGGTTTTGTAACGCATTAGGGCATCCTATCAGTAAG
TCGACTTGGTCCGATTTCTCTGATTCTCATCTTATCGACCGATTTGTGCG
TATATGTAGAAATCTTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAA