CN187182
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.139e-62 Identity = 131/240 (54.58%), Postives = 159/240 (66.25%), Query Frame = 1 Query: 76 SSSRAGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIA 777 S AG IRT +DLNR EYYTGG+KSGM+VQDP K DVD +F+QA++ AV+ P+E FTG ARLLSGE V S+PQQ P+ I+H I FW NGFTVNDGPLR DPENA+F+ SI +SECP ELEPADK+ VHV+L+RR EP K PFQGVGRTLG+S S ++S P S P+N A + S GLVVD P+TS+Q+RLADGTRL++ Sbjct: 128 SRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVS 362
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.007e-26 Identity = 92/266 (34.59%), Postives = 134/266 (50.38%), Query Frame = 1 Query: 73 PSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE-PADKRSSVHVNLI-RRDVKCPEPEK-HHVPFQGVGRTLGSSSTAASE------------PTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRL 771 P+ R GGIRTLSD N Q+Y+TGGEKSG++V+ K G + V+ +F+ AK GAV E +E G G S P++ +P + + FW GFT++DGPLR+ D+PEN L+ I++ P+EL+ A + + V LI + EP K +V F G G+TLGSSST+ + T +T +T + SS + VD++ P+T+VQIRLA+G+RL Sbjct: 93 PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDYVEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSS--INVDQSQPTTTVQIRLANGSRL 354
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.530e-26 Identity = 84/258 (32.56%), Postives = 115/258 (44.57%), Query Frame = 1 Query: 40 SMGSRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPT-VDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRL 771 S S P + SSSR + TL DL + Q+++ GGEKSG+ VQ+P ++ P + FTG AR L GE PS PQ P + + FWA+GF+V+DG L R DDP+NA L SI++ P + A V V + + D K P+ + PF G G+ LGS + P + P +SS VDE+ P ++QIRL DGTRL Sbjct: 60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEKYVRPKPKYQPFAGKGQRLGSPTPGIRAPAPSEPAPAPQSSSGPPKPNVDESQPVVTLQIRLGDGTRL 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20 Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ VD +F AKE GAV E + F G L S Q VH ++ W +GF++++G LR DP NA FLESI++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S +++DE+ P+T++QIRLADG RL+ Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLV 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20 Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ VD +F AKE GAV E + F G L S Q VH ++ W +GF++++G LR DP NA FLESI++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S +++DE+ P+T++QIRLADG RL+ Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLV 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20 Identity = 84/276 (30.43%), Postives = 120/276 (43.48%), Query Frame = 1 Query: 22 SRKNFQSMGSRDKKPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLP---STSVQIRLADGTRLIAH 780 S + + GS +P K SS G + SD+ R G P+ + GGE SG+ V DPS DPN + + +A+ ++GA G + FTG L G T+ +A + +PE + I FW GF V DGPL R DDP N+ +L + + P +L V VN+ ++ D P + F G G+ LGS S P P N ++ E + D N P TS+QIR A+G R + H Sbjct: 97 SNEYLKRKGSTSPEPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSPA--EVPKNETPAAQEQPMPD-NEPKQGDTSIQIRYANGKREVLH 364
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19 Identity = 71/223 (31.84%), Postives = 108/223 (48.43%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ VD +F AKE GAV E + F G G + +AP++ V + W GF++++G LR DP NA FLESI++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S + +DE+ P+T++QIRLADG RL+ Sbjct: 92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLV 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19 Identity = 70/223 (31.39%), Postives = 108/223 (48.43%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ VD +F AKE GAV E + F G G + +AP++ V + W GF++++G LR DP NA FLESI++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S ++++E P+T++QIRLADG RL+ Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLV 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19 Identity = 70/223 (31.39%), Postives = 108/223 (48.43%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ VD +F AKE GAV E + F G G + +AP++ V + W GF++++G LR DP NA FLESI++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S ++++E P+T++QIRLADG RL+ Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLV 309
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19 Identity = 69/223 (30.94%), Postives = 108/223 (48.43%), Query Frame = 1 Query: 163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIV-----HNIV--------FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774 Q +Y GG E+SG +V P K PN+ V+ +F AKE GAV + + F G G + + P++ V HN V W GF+++ G LR DP NA FL+ I++ E P EL + V++++ RD + +P+ F G G+ LGS++ + + + +S + +DE+ P T++QIRLADG RL+ Sbjct: 91 QRFYAGGSERSGQQIVGPPRKKSPNELVEDLFKGAKEHGAVAVDRTAKSSGESSKPKPFAG-----GGYRLGATPEEESAYVAGERRHNSVQDVHVVLKLWKTGFSLDSGELRSYQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLV 308 The following BLAST results are available for this feature:
BLAST of CN187182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187182 ID=CN187182; Name=CN187182; organism=Citrus sinensis; type=EST; length=782bpback to top |