CN187182

Overview
NameCN187182
Unique NameCN187182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.139e-62
Identity = 131/240 (54.58%), Postives = 159/240 (66.25%), Query Frame = 1
Query:   76 SSSRAGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQ-----PEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIA 777
            S   AG IRT +DLNR              EYYTGG+KSGM+VQDP K    DVD +F+QA++  AV+ P+E          FTG ARLLSGE V S+PQQ     P+ I+H I FW NGFTVNDGPLR   DPENA+F+ SI +SECP ELEPADK+  VHV+L+RR     EP K   PFQGVGRTLG+S S ++S P   S P+N A + S GLVVD   P+TS+Q+RLADGTRL++
Sbjct:  128 SRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKK--VKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVS 362          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.007e-26
Identity = 92/266 (34.59%), Postives = 134/266 (50.38%), Query Frame = 1
Query:   73 PSSSRAGGIRTLSDLNRRS------GPXXXXXXXAPQEYYTGGEKSGMLVQDPSK-----GDPNDVDAIFNQAKELGAV---EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEP----IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELE-PADKRSSVHVNLI-RRDVKCPEPEK-HHVPFQGVGRTLGSSSTAASE------------PTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRL 771
            P+  R GGIRTLSD N                    Q+Y+TGGEKSG++V+   K     G  + V+ +F+ AK  GAV   E  +E            G      G    S P++ +P    +   + FW  GFT++DGPLR+ D+PEN   L+ I++   P+EL+  A   + + V LI   +    EP K  +V F G G+TLGSSST+ +              T  +T  +T + SS  + VD++ P+T+VQIRLA+G+RL
Sbjct:   93 PAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPDSFDSVGYQLGATD--QGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPRELQKKATTPNGLSVTLINNHNQDYVEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSS--INVDQSQPTTTVQIRLANGSRL 354          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.530e-26
Identity = 84/258 (32.56%), Postives = 115/258 (44.57%), Query Frame = 1
Query:   40 SMGSRDKKPAKPSSSRAGGIR---TLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSA----------PQQPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPT-VDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRL 771
            S  S    P + SSSR    +   TL DL   +           Q+++ GGEKSG+ VQ+P       ++              P  +         FTG AR L GE  PS           PQ P  +   + FWA+GF+V+DG L R DDP+NA  L SI++   P  +  A     V V + + D K   P+  + PF G G+ LGS +     P   +  P   +SS      VDE+ P  ++QIRL DGTRL
Sbjct:   60 SAKSSSSTPRESSSSRKQPPKKFATLGDLASGAADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKKKIIEKARRTQLPASDDSEPRRNY--------FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSIRQGRAPLSIMNAQHGQDVDVEIKQHDEKYVRPKPKYQPFAGKGQRLGSPTPGIRAPAPSEPAPAPQSSSGPPKPNVDESQPVVTLQIRLGDGTRL 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLV 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLL-------SGETVPSAPQQPEPIVHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G    L       S        Q     VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLV 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: UBX1_YEAST (UBX domain-containing protein 1 OS=Saccharomyces cerevisiae GN=SHP1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 84/276 (30.43%), Postives = 120/276 (43.48%), Query Frame = 1
Query:   22 SRKNFQSMGSRDKKPAKPSSSRAGG----IRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPSKGDPNDV-DAIFNQAK---ELGAVEGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQ-----------QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLP---STSVQIRLADGTRLIAH 780
            S +  +  GS   +P K SS    G      + SD+ R  G         P+  + GGE SG+ V DPS  DPN +   +  +A+   ++GA  G  +          FTG    L G T+ +A +           +PE +   I FW  GF V DGPL R DDP N+ +L  + +   P +L        V VN+ ++ D     P +    F G G+ LGS     S P     P N   ++ E  + D N P    TS+QIR A+G R + H
Sbjct:   97 SNEYLKRKGSTSPEPTKGSSRSGSGNNSRFMSFSDMVR--GQADDDDEDQPRNTFAGGETSGLEVTDPS--DPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYLSELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSPA--EVPKNETPAAQEQPMPD-NEPKQGDTSIQIRYANGKREVLH 364          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 71/223 (31.84%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  + +DE+ P+T++QIRLADG RL+
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLV 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 70/223 (31.39%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  ++++E  P+T++QIRLADG RL+
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLV 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 70/223 (31.39%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIVHN-------------IVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ VD +F  AKE GAV  E   +          F G      G  + +AP++    V               +  W  GF++++G LR   DP NA FLESI++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  ++++E  P+T++QIRLADG RL+
Sbjct:   92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAG-----GGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLV 309          
BLAST of CN187182 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 69/223 (30.94%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  163 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIV-----HNIV--------FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLI 774
            Q +Y GG E+SG  +V  P K  PN+ V+ +F  AKE GAV  +   +          F G      G  + + P++    V     HN V         W  GF+++ G LR   DP NA FL+ I++ E P EL    +   V++++   RD +  +P+     F G G+ LGS++      +  +      + +S  + +DE+ P T++QIRLADG RL+
Sbjct:   91 QRFYAGGSERSGQQIVGPPRKKSPNELVEDLFKGAKEHGAVAVDRTAKSSGESSKPKPFAG-----GGYRLGATPEEESAYVAGERRHNSVQDVHVVLKLWKTGFSLDSGELRSYQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLV 308          
The following BLAST results are available for this feature:
BLAST of CN187182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBAX1_ARATH1.139e-6254.58UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI1.007e-2634.59NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI6.530e-2632.56UBX domain-containing protein 1 OS=Emericella nidu... [more]
NSF1C_PONAB5.354e-2033.03NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN5.354e-2033.03NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
UBX1_YEAST9.133e-2030.43UBX domain-containing protein 1 OS=Saccharomyces c... [more]
NSF1C_BOVIN2.035e-1931.84NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
NSF1C_RAT7.731e-1931.39NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE7.731e-1931.39NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
NSF1C_CHICK7.731e-1930.94NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004B02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187182 ID=CN187182; Name=CN187182; organism=Citrus sinensis; type=EST; length=782bp
ATATAGGCTTTTCGAGTTTGAAGCAGAAAAAACTTCCAATCTATGGGGTC
ACGTGACAAAAAACCAGCAAAACCATCAAGCAGTCGGGCCGGCGGCATAC
GCACGCTCTCCGATCTGAACCGGCGGTCGGGACCCGACTCCGACTCAGAC
GATGATGCACCTCAAGAGTATTACACTGGTGGCGAGAAGAGTGGTATGCT
TGTCCAAGATCCTTCCAAGGGCGATCCTAATGATGTGGATGCGATTTTCA
ATCAGGCTAAGGAACTGGGAGCTGTAGAAGGGCCGCTTGAGCATCTCAGT
CCATCTTCAAGCTCAAGAAGCTTTACTGGAACTGCTAGATTACTCTCGGG
GGAAACTGTACCGTCTGCACCTCAGCAGCCTGAGCCCATTGTTCATAACA
TTGTTTTCTGGGCCAATGGTTTCACTGTTAATGATGGTCCCTTGAGGAGG
TTGGATGATCCTGAAAATGCATCTTTCTTAGAGAGCATCAAAAAGTCTGA
GTGTCCAAAAGAGCTAGAGCCTGCTGATAAAAGGTCCTCAGTTCATGTCA
ATCTGATAAGGAGGGATGTGAAATGCCCTGAACCAGAGAAGCACCATGTT
CCATTTCAGGGTGTTGGAAGAACACTGGGTAGCAGCAGTACTGCAGCTTC
TGAACCAACTGTTGATTCCACCCCGGTCAACACTGCTTCCTCCTCTTCTG
AGGGTCTGGTTGTTGATGAAAACCTTCCGTCGACGTCAGTTCAGATCAGG
TTGGCGGACGGAACCCGCTTGATAGCACACTT
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