CN187178

Overview
NameCN187178
Unique NameCN187178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN187178 vs. ExPASy Swiss-Prot
Match: UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.292e-36
Identity = 76/97 (78.35%), Postives = 83/97 (85.57%), Query Frame = -1 
Query:  494 SGCTKCLGALQMLK--GGSKNGTAEHEDNRASKMFSRDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSSHPPHESKCSPDQENMPLAVDSLQFEKT 778
            SGCT+CLGALQ LK  GG+K  T E    R +KM S+DCQLMGLTWLLARNKTAYIPTVSAVLRAIMYS HPPH +KCSPDQENMPLAVDSLQF+K+
Sbjct:  187 SGCTRCLGALQKLKVRGGNKKTTTE----RGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKS 279
The following BLAST results are available for this feature:
BLAST of CN187178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI7_ARATH5.292e-3678.35Uncharacterized GPI-anchored protein At4g28100 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004A24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187178 ID=CN187178; Name=CN187178; organism=Citrus sinensis; type=EST; length=778bp
ATGACTAACTAATTTCAATGAATTTATTTAAATTTCAAATAAATCTCGAC
TCATAAAGTTTGGCCTTTACAAAAATAGGCACATGAGAAAATTTCCAGTA
AAAAGGATAAGCATATGACAACGATATATAATATTTATATATATATGTGG
ACTCATATATATATATATACCCAGCAAAAATAAATATAAATGGTAAGGGT
AACTGGGGTAAACTACTCGTTGTCCTCGTACTACAGGTTAAAAGAAAGCT
GAGAAGGAGTCTGAAATTTACAGTGGCCAAAATGACGAAAAAGACTTTGT
CTCCCAGCTTCACGTGACCTCAACAGAAACCCAAAAATTAACAAAAAAAA
TACACAGATGCCAGCCAGGCCAGAGGCCACCGCTACGGTTGACCCCGCTA
GACCAGCAGAGAAAACAAAATGATTAGGGGTAAAAATGGAACTAAAACAG
CACGAACATTTTGCGGCCGTGATGGTGAAGACGATGAAGATTGGGTTTTT
TCGAACTGAAGAGAATCAACGGCCAAGGGCATGTTCTCTTGATCAGGGCT
GCACTTGGACTCGTGAGGTGGGTGCGAGCTGTACATTATGGCCCGCAACA
CGGCTGAAACGGTGGGGATGTACGCCGTTTTGTTGCGCGCCAGGAGCCAC
GTCAGCCCCATCAGCTGGCAGTCCCTGCTGAACATCTTGCTTGCCCTGTT
GTCTTCGTGTTCTGCTGTTCCGTTCTTGCTCCCGCCTTTTAGCATTTGAA
GTGCACCAAGGCATTTAGTACAGCCTGA
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