CK937249

Overview
NameCK937249
Unique NameCK937249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937249_ssr357 microsatellite CK937249_ssr357:357..368. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937249_ssr376 microsatellite CK937249_ssr376:376..387. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:5..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.649e-39
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          

HSP 2 Score: 115.546 bits (288), Expect = 3.917e-25
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRVDGKGA 332
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV + G GA
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGA 83          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.882e-38
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          

HSP 2 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 57/83 (68.67%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRVDGKGA 332
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+  G  A
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAA 83          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.174e-37
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 72/87 (82.76%), Postives = 82/87 (94.25%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          

HSP 2 Score: 123.635 bits (309), Expect = 1.438e-27
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRVDG 323
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVRV G
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGG 80          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 3.415e-37
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          

HSP 2 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS-FPGKAVGVRVDG 323
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L  S    +  GV V+G
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEG 81          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          

HSP 2 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRVDGKG 329
            MA++F+++ +E+GLK LD+YL  +SYISG Q + DD+ VY+A    P+ S+ N + W+  + + L  S      GV  DG+G
Sbjct:    1 MAVSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLS------GVTADGQG 76          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          

HSP 2 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRVDGKG 329
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S      GV  +G+G
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS------GVTAEGEG 76          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.874e-35
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          

HSP 2 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS-FPGKAVGVRVDG 323
            MA+TFSDL + +GL SLD YL  +SYI+G Q +KDD+ V++AV      S+ N S WY  + + L  S   G+  GV V+G
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEG 81          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          

HSP 2 Score: 102.449 bits (254), Expect = 3.431e-21
Identity = 45/76 (59.21%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   84 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 311
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CK937249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ3.649e-3990.80Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B2_ARATH6.882e-3888.51Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH1.174e-3783.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.533e-3782.76Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH1.533e-3788.51Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR3.415e-3786.21Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ1.298e-3686.21Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ3.776e-3685.06Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU1.874e-3585.06Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT5.643e-3278.16Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004512_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937249 ID=CK937249; Name=CK937249; organism=Citrus sinensis; type=EST; length=878bp
GGGGAATCGCAAAAGTAGGAAGCGATTATCCTGTGTTGAAGTTGTGCGTC
TCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAATGGCCATCACTTTTTC
GGATCTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTTTCTG
GGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAAGGTC
TACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCAGCAG
CTGGTACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGCAAAG
CCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCAGTTGACGCCGCCGCAG
CCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATCTCTTT
GGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGC
TAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTT
TGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAG
GCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATT
GGTCCCAGTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCG
TTGACGATCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCT
GAGCCCTGCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAA
AATTTAAGAATCCTCTCATTGTTTTGCCTTATAGTGCAGCCATTTTTGGC
TGCAATTTAGTTTTTGTCGTTTTAATTGNNNTCTGCTTTTTAATGGGTTT
GCTTGGCCTGCATTTTCCGTTGCTAAAT
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