CN187108

Overview
NameCN187108
Unique NameCN187108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187108 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 2
Query:  113 SGQKPSVAQTCNLLSQYFKENGRFANKGV-------------------QTLNLLPNLENSAEISRVLNVKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSNAVVN-PELNNNSQTV--------------------------PIARRASLHRFFEKRKDRAIARAPYQVNCP 583
            +G+KPS +QTC+ LSQY KENG F +  +                    T++L P  E S   S V +VK ++ F   P+F+S++S                 + E  ++ +TI YAG+V VFND SAEKAKE++ LA+K ++++   N  ++ +N  T+                          PIARRASLHRF EKRKDR  ++APYQ+  P
Sbjct:   17 TGKKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQPTTTMSLFP-CEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDP 231          
BLAST of CN187108 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 68/221 (30.77%), Postives = 99/221 (44.80%), Query Frame = 2
Query:  113 SGQKPSVAQTCNLLSQYFKENGRFANKGVQTLNLLPNLENSAEISRVLN-----------------VKASDFFANMPTFASNNS-------------VNEARTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSN-AVVNPELNNNSQT-----------------------------------VPIARRASLHRFFEKRKDRAIARAPYQVN 577
            SG+KPS +QTC  LS+Y KE G F +  +  +   P++   +    ++N                 +K    F    +F+S++S                 + E  S+ +TI Y G+V VF+D SAEKAKE++ LA K S+ +      E+NNN                                      +PIARRASLHRF EKRKDR  ++APYQ++
Sbjct:   12 SGRKPSFSQTCTRLSRYLKEKGSFGDLSLG-MTCKPDVNGGSRQPTMMNLFPCEASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQID 231          
BLAST of CN187108 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 80/213 (37.56%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  110 SSGQKP---SVAQTCNLLSQYFKENGRFAN-------------------KGVQTLNLLPNLENSAE-----ISRVLNVKASDFFANMPTFASNNSVNEARTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKAS-----SSNA----------VVNPELN------NNS--------QTVP-IARRASLHRFFEKRKDRAIARAPYQVN 577
            S+GQ P   + +Q C+LLS+Y KE G F N                   KG Q  N++  +E S       I +    +AS    +   +   +   +   E G+SQ+TI + GKV VFN+   +KAKEIM +A +A+     S N+          VV P+LN      NN         Q V  IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:    2 STGQAPEKSNFSQRCSLLSRYLKEKGSFGNINMGLARKSDLELAGKFDLKGQQ--NVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVN 212          
BLAST of CN187108 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 68/198 (34.34%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  119 QKPSVAQTCNLLSQYFKENGRFANKGVQTLNLLPNLENSAEISRVLN-------VKASDFFANMPTFASNNSVNE----ARTEHGSSQMTIIYAGKVFVFNDISAEKAKEIMALATKASSSNAV-----VNPELNNN--SQTVP---------------------------IARRASLHRFFEKRKDRAIARAPYQVN 577
            +K    + C+LLS+Y KE G F N     L L    ++S  +    +       +  +      P+ +S   V +    + ++ GSSQ+TI + GKV V+N+   +KAKEIM +A +A     +     +N E NNN  S  +P                           IARRASLHRFF KRKDRA+ARAPYQVN
Sbjct:   14 EKSDFTRRCSLLSRYLKEKGSFGNID---LGLYRKPDSSLALPGKFDPPGKQNAMHKAGHSKGEPSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPYQVN 208          
The following BLAST results are available for this feature:
BLAST of CN187108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH2.546e-2435.19Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH8.475e-2030.77Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH2.466e-1937.56Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI11A_ARATH2.088e-1834.34Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187108 ID=CN187108; Name=CN187108; organism=Citrus sinensis; type=EST; length=747bp
AGTAAGGCAGAATCAGATTTTTCTTGTGCACTCAAAATTAATCAACAGAA
ACTTTCTCTGTCTTCTCAGTTCTTACACAGGGCAGAACAAGCAACAGGCC
ATCATGTCGAGCTCAGGCCAAAAACCCAGCGTTGCTCAGACTTGCAATCT
TTTGAGTCAGTACTTTAAGGAAAATGGAAGATTTGCAAATAAAGGTGTGC
AAACACTGAACTTGCTGCCGAACCTGGAAAATTCTGCGGAGATTTCAAGA
GTACTGAATGTGAAAGCCAGTGATTTCTTCGCAAATATGCCAACTTTTGC
TTCCAACAATTCCGTAAATGAAGCCAGAACGGAGCATGGAAGCTCTCAAA
TGACGATAATCTATGCCGGGAAAGTGTTCGTCTTCAACGACATTTCTGCG
GAGAAGGCAAAAGAAATCATGGCCTTAGCCACAAAAGCATCGAGCTCTAA
TGCTGTTGTTAACCCGGAATTGAACAACAACTCTCAGACGGTGCCAATAG
CAAGAAGAGCTTCACTTCACCGTTTCTTTGAGAAAAGAAAAGACAGGGCT
ATAGCAAGAGCTCCGTACCAAGTGAATTGTCCTTATTCATCAGTGGCTCC
TGCTGCTGCCGCTGCTCCTCCTCCTCCAAAGCCAAAAGATCAAAGCAAGT
ACTCATGGCTGCACCTTGAAGGCCAATCGTCATCAAAACAGCTTGATCTC
AACTTGTAGTGTGATGGGTTCGCCATCTTATTCAACTACTGCCATAT
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