CN187102

Overview
NameCN187102
Unique NameCN187102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.755e-59
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = -2
Query:  409 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 720
            DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAY+CKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct:    7 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.008e-55
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = -2
Query:  409 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 720
            DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAY+CKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    7 DLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.008e-55
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = -2
Query:  409 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 720
            DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAY+CKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    7 DLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.008e-55
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = -2
Query:  409 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 720
            DLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAY+CKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    7 DLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.454e-53
Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = -2
Query:  412 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 720
            DLI CRKQPG+AIGRLCEK DGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAY+CK CT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFK+
Sbjct:    7 DLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = -2
Query:  424 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKY 720
            DL++CR+QPGI +G+LCE+CD KC ICDS+VRP TLVR+CDEC +GS Q RC+ICG  G+SD Y+C ECT+ E DRDGCP+++NLGS++TD FYERKK+
Sbjct:    7 DLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105          
BLAST of CN187102 vs. ExPASy Swiss-Prot
Match: RDS3_YEAST (Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae GN=RDS3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  427 DLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYFCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKK 720
            DLIMC KQPG+  G LCEKCDGKC ICDSYVRP   VRVC+ C++G     C+IC   VG++DA++C EC +  KD+DGCP+I+NLGS + D  +E+KK
Sbjct:    7 DLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105          
The following BLAST results are available for this feature:
BLAST of CN187102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PHF5_ARATH1.755e-5998.08Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT2.008e-5590.38PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE2.008e-5590.38PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN2.008e-5590.38PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME2.454e-5388.35Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO8.190e-4166.67Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
RDS3_YEAST7.683e-3158.59Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187102 ID=CN187102; Name=CN187102; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTTTTTTTTTTTTACCCTTGAACTAAGCCCTTTTAATTCCTTAATA
GCAAAATAAGATTGACCGTGGCCCATCAAAGTACACATAACCATCAACTG
ATCCACTACTGAGATCACTCATGCTTATTAAACTGAAAACCAAGTCCTAA
TAGAAACAAATGAGGTTACTTAAGCAGAAGTTTCCATTACAGATATGTTC
AAATACAATCCGAACCCATTAGAATATAAGCAGGTGCTTCAGTAATGAAT
AGAGGTTAAGATAATAAGTCACTCTAATGACTCGTGGTTACAGATGCCAC
ACATCTTAGTTCCAACTTCAAACACCTCAAAATCCATCATCGTCAAGAAT
TGTATATAATGGTAGATAAAATGCTCTTGCTACAAAAACAATTAGCGGGC
TATCATCATCTTTTCTTAAAACCATATTTCTTACGTTCGTAAAACAGGTC
CGTTTTCGCGCTGCCCAAATTGACAATTTTTGGACAACCATCCCTGTCCT
TCTCTTGCTGTGTGCACTCTTTGCAGAAGTATGCATCAGAGATTCCCACC
CCTCCACAGATGACACATCGACCCTGGAAGGAACCATAATTGCATTCATC
ACAGACTCGCACAAGGGTGCAAGGACGCACATAGGAATCACAAATCACAC
ACTTCCCATCACATTTCTCGCAGAGCCTTCCAATGGCTATCCCTGGTTGC
TTCCTGCACATGATCAAATCA
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