CN187094

Overview
NameCN187094
Unique NameCN187094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL1_ARATH (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.215e-78
Identity = 143/152 (94.08%), Postives = 148/152 (97.37%), Query Frame = 3
Query:  240 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WNPFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF
Sbjct:   67 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL2_ARATH (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana GN=FIB2 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.536e-78
Identity = 142/152 (93.42%), Postives = 147/152 (96.71%), Query Frame = 3
Query:  240 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            SKV+VEPHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WNPFRSKLAAA+LGGVDNIWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF
Sbjct:   78 SKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 229          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_SCHPO (rRNA 2'-O-methyltransferase fibrillarin OS=Schizosaccharomyces pombe GN=fib1 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.545e-70
Identity = 124/152 (81.58%), Postives = 143/152 (94.08%), Query Frame = 3
Query:  240 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            +KV++EPHRH GVFIA+GKED LVT+NLV GE+VYNEKRISV + DGTKVEYR+WNPFRSKLAA +LGG+DNI+IKPGARVLYLGAA+GT+VSHV+D+VGP G+VYAVEFSHRSGRDL+NMAKKRTNVIPI+EDARH  KYRMLVGMVDV+F
Sbjct:   71 AKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSKLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNVIPIVEDARHVQKYRMLVGMVDVVF 222          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_RAT (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.067e-66
Identity = 122/150 (81.33%), Postives = 137/150 (91.33%), Query Frame = 3
Query:  246 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF
Sbjct:   92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIF 240          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_MOUSE (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.067e-66
Identity = 122/150 (81.33%), Postives = 137/150 (91.33%), Query Frame = 3
Query:  246 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF
Sbjct:   92 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIF 240          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_HUMAN (rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.067e-66
Identity = 122/150 (81.33%), Postives = 137/150 (91.33%), Query Frame = 3
Query:  246 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            V+VEPHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF
Sbjct:   86 VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIF 234          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_XENLA (rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.394e-66
Identity = 123/152 (80.92%), Postives = 138/152 (90.79%), Query Frame = 3
Query:  243 KVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            KV+VEPHRHEG+FI +GKEDALVTKNLV GE+VY EKRISV  EDG  K EYR WNPFRSK+AAA+LGGVD I IKPG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYR+LVGMVDV+F
Sbjct:   87 KVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRSKIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVIEDARHPHKYRILVGMVDVVF 236          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_DROER (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 120/150 (80.00%), Postives = 136/150 (90.67%), Query Frame = 3
Query:  246 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            V +EPHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPIIEDARHP KYRMLVGMVD IF
Sbjct:  112 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIF 260          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_DROME (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.856e-65
Identity = 119/150 (79.33%), Postives = 135/150 (90.00%), Query Frame = 3
Query:  246 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            V +EPHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+  +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPIIEDARHP KYRMLVGMVD IF
Sbjct:  111 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIF 259          
BLAST of CN187094 vs. ExPASy Swiss-Prot
Match: FBRL_CANGA (rRNA 2'-O-methyltransferase fibrillarin OS=Candida glabrata GN=NOP1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.197e-63
Identity = 115/158 (72.78%), Postives = 138/158 (87.34%), Query Frame = 3
Query:  240 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQN---EDG---TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 695
            +KVV+EPH+H+GV+IA+GKED LVTKN+  GE+VY EKR+SV+    EDG   TKVEYR+WNPFRSKLAA ++GG+D ++I PG +VLYLGAASGT+VSHVSD+VGP GVVYAVEFSHR GR+L++MAKKR NVIPIIEDARHP KYRMLVGMVD +F
Sbjct:   80 AKVVIEPHKHDGVYIARGKEDLLVTKNMAPGESVYGEKRVSVEEPSKEDGVPPTKVEYRVWNPFRSKLAAGIMGGLDELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRPNVIPIIEDARHPQKYRMLVGMVDAVF 237          
The following BLAST results are available for this feature:
BLAST of CN187094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL1_ARATH1.215e-7894.08rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabi... [more]
FBRL2_ARATH3.536e-7893.42rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabi... [more]
FBRL_SCHPO3.545e-7081.58rRNA 2'-O-methyltransferase fibrillarin OS=Schizos... [more]
FBRL_RAT1.067e-6681.33rRNA 2'-O-methyltransferase fibrillarin OS=Rattus ... [more]
FBRL_MOUSE1.067e-6681.33rRNA 2'-O-methyltransferase fibrillarin OS=Mus mus... [more]
FBRL_HUMAN1.067e-6681.33rRNA 2'-O-methyltransferase fibrillarin OS=Homo sa... [more]
FBRL_XENLA1.394e-6680.92rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus... [more]
FBRL_DROER1.180e-6580.00rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_DROME5.856e-6579.33rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_CANGA4.197e-6372.78rRNA 2'-O-methyltransferase fibrillarin OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187094 ID=CN187094; Name=CN187094; organism=Citrus sinensis; type=EST; length=697bp
ATGTTCACTCTTTGTATTCTTTGTAGCCGGACAGAGCATCAAACATGAGA
CCTCCAAGAGGACGCGGTGGTGGAGGTGGGTTCAGGGGAGGCAGAGGTGA
TGGAGGAGGAAGAGGAAGAGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAG
GTGGTAGCGCTATGAGAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGT
GGAGGAAGAGGCCGCGGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGT
AGTTGAGCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAG
ACGCCCTTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTATACAATGAG
AAGAGGATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAAT
TTGGAATCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTG
ATAATATTTGGATTAAACCTGGTGCTAGGGTTCTATACCTTGGTGCTGCT
TCCGGCACAACTGTCTCTCATGTTTCTGACATTGTTGGCCCTAATGGAGT
AGTTTATGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATA
TGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACAT
CCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTC
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