CX675254
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.632e-48 Identity = 95/155 (61.29%), Postives = 116/155 (74.84%), Query Frame = -2 Query: 281 KSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 742 +SECP ELEPADK+ VHV+L+RR EP K PFQGVGRTLG+S S ++S P S P+N A + S GLVVD P+TS+Q+RLADGTRL++ FN HHT+ D+ FIDASRPG ++ YQL MGFPPK L + QTIEQAG+AN+VVIQKF Sbjct: 267 RSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S +++DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD +QT+++A L N+V++Q+ Sbjct: 214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S +++DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD +QT+++A L N+V++Q+ Sbjct: 214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19 Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S + +DE+ P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 52/155 (33.55%), Postives = 85/155 (54.84%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL + V++++ RD + +P+ F G G+ LGS++ + + + +S + +DE+ P T++QIRLADG RL+ FN +H I DI FI +RP A + M FP K L D QT+++A L N+V++Q+ Sbjct: 213 RRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18 Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S ++++E P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18 Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 ++ E P EL V++++ RD +P+ F G G+ LGS++ + + + +S ++++E P+T++QIRLADG RL+ FN H ISDI FI +RP A + M FP K LAD QT+++A L N+V++Q+ Sbjct: 214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17 Identity = 54/160 (33.75%), Postives = 89/160 (55.62%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSS-----STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 K+ E P EL+ + V++++ +D + +P F G G+ LGS ST +S D + +N A +++D+++P+T +QIRLADG+RL+ FN H I D+ FI SRP A + + FP K L D T T+++A + N+V++Q+ Sbjct: 176 KRGETPLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAA------VLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_XENLA (UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16 Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLV----VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 KK E P EL+ V++++ +D + +P F G G+ LGS + P + STP + L +DE++P+T +QIRLADGTRLI FNL H I D+ FI +R A+ + FP L D TQT+E+A + N+V++Q+ Sbjct: 195 KKGEIPVELQRLVHGGQVNLDMEDHQDQEYIKPRLKFKAFSGEGKKLGSVT-----PEIISTPSSPEEEHKRFLNAEVDLDEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTDETQTLEEADILNTVILQR 348
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16 Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = -2 Query: 284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSS-----STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745 K+ E P EL+ S V +++ +D + +P F G G+ LGS ST +S D + +N A +++D+++P+T +QIRLADG+RLI FN H I D+ FI SRP A + + FP K L D + T++ A + N+V++Q+ Sbjct: 176 KRGEIPLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAA------VLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329 The following BLAST results are available for this feature:
BLAST of CX675254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675254 ID=CX675254; Name=CX675254; organism=Citrus sinensis; type=EST; length=746bpback to top |