CX675254

Overview
NameCX675254
Unique NameCX675254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.632e-48
Identity = 95/155 (61.29%), Postives = 116/155 (74.84%), Query Frame = -2
Query:  281 KSECPKELEPADKRSSVHVNLIRRDVKCPEPEKHHVPFQGVGRTLGSS-STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 742
            +SECP ELEPADK+  VHV+L+RR     EP K   PFQGVGRTLG+S S ++S P   S P+N A + S GLVVD   P+TS+Q+RLADGTRL++ FN HHT+ D+  FIDASRPG ++ YQL  MGFPPK L +  QTIEQAG+AN+VVIQKF
Sbjct:  267 RSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  + +DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNTSSPAQQAENEAKASSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 52/155 (33.55%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL    +   V++++   RD +  +P+     F G G+ LGS++      +  +      + +S  + +DE+ P T++QIRLADG RL+  FN +H I DI  FI  +RP  A    + M  FP K L D  QT+++A L N+V++Q+
Sbjct:  213 RRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            ++ E P EL        V++++   RD    +P+     F G G+ LGS++      +  +      + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  214 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 54/160 (33.75%), Postives = 89/160 (55.62%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSS-----STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            K+ E P EL+     + V++++   +D +  +P      F G G+ LGS      ST +S    D + +N A      +++D+++P+T +QIRLADG+RL+  FN  H I D+  FI  SRP  A    + +  FP K L D T T+++A + N+V++Q+
Sbjct:  176 KRGETPLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAA------VLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_XENLA (UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLV----VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            KK E P EL+       V++++   +D +  +P      F G G+ LGS +     P + STP +        L     +DE++P+T +QIRLADGTRLI  FNL H I D+  FI  +R   A+     +  FP   L D TQT+E+A + N+V++Q+
Sbjct:  195 KKGEIPVELQRLVHGGQVNLDMEDHQDQEYIKPRLKFKAFSGEGKKLGSVT-----PEIISTPSSPEEEHKRFLNAEVDLDEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTDETQTLEEADILNTVILQR 348          
BLAST of CX675254 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  284 KKSECPKELEPADKRSSVHVNLI-RRDVKCPEPEKHHVPFQGVGRTLGSS-----STAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 745
            K+ E P EL+     S V +++   +D +  +P      F G G+ LGS      ST +S    D + +N A      +++D+++P+T +QIRLADG+RLI  FN  H I D+  FI  SRP  A    + +  FP K L D + T++ A + N+V++Q+
Sbjct:  176 KRGEIPLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAA------VLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329          
The following BLAST results are available for this feature:
BLAST of CX675254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBAX1_ARATH5.632e-4861.29UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_PONAB1.446e-1934.84NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN1.446e-1934.84NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_BOVIN5.494e-1934.84NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
NSF1C_CHICK9.371e-1933.55NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]
NSF1C_RAT2.088e-1834.19NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE2.088e-1834.19NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
UBX2B_MOUSE3.937e-1733.75UBX domain-containing protein 2B OS=Mus musculus G... [more]
UBX2B_XENLA1.145e-1635.85UBX domain-containing protein 2B OS=Xenopus laevis... [more]
UBX2B_RAT1.496e-1634.38UBX domain-containing protein 2B OS=Rattus norvegi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_60H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60H08-O16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675254 ID=CX675254; Name=CX675254; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTCGACAAATGTGGGTTTAAAACATATGGGAAAAGATGCAAAGAA
AAATCACTGTAAACATTTTGAAGACAGATCATGGTACTAAAAACAAAAAC
ATAGAGACTGCTAATCACTCGAATCAACCCATCCATTACCAAGGTGTCGT
CTACAAAAACCTAATCTCTCTCTACATACAAGTAAATGGAGAGACTCTTT
TTCTTTTTTTAAAGTGCAATAAAATATTTTCAGTTAATAATAGGCAACTG
AGAGCGTTTGAAGAGCAGAGTGCTTGCTCAGAATTTCTGGATAACCACCG
AATTGGCAAGGCCTGCCTGCTCTATGGTCTGAGTTCGATCAGCGAGAACT
TTTGGAGGAAATCCCATCATCTGCAGCTGATAGTTCCTAGCAGTCCCAGG
CCTAGATGCATCAATGAAGGAATGAATGTCGCTGATTGTGTGGTGAAGAT
TGAAGTGTGCTATCAAGCGGGTTCCGTCCGCCAACCTGATCTGAACTGAC
GTCGACGGAAGGTTTTCATCAACAACCAGACCCTCAGAAGAGGAGGAAGC
AGTGTTGACCGGGGTGGAATCAACAGTTGGTTCAGAAGCTGCAGTACTGC
TGCTACCCAGTGTTCTTCCAACACCCTGAAATGGAACATGGTGCTTCTCT
GGTTCAGGGCATTTCACATCCCTCCTTATCAGATTGACATGAACTGAGGA
CCTTTTATCAGCAGGCTCTAGCTCTTTTGGACACTCAGACTTTTTG
back to top