CN187090

Overview
NameCN187090
Unique NameCN187090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = -3
Query:  269 MATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 553
            MA LGG R+V    N+ EI +LARFAV+EHNKKQN+ L+F           SGTLY ITLEA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct:    1 MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = -3
Query:  254 QTMATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 559
            + MA +GGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F           +GTL+ +TLE +E GQKKL+EAKVW KPW+ FKEL+EF P + + + T+
Sbjct:   32 EEMALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  269 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 544
            LGGV  V    N+  +V+LARFAV EHNKK NS L+F           +GTLY  T+E  EG  KKL+EAKVWEKPWM FKEL+EF PV  S
Sbjct:   47 LGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = -3
Query:  257 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSST 544
            LGG  +  + AN+ E   LARFAVDEHNK++N+ L+F           +GTL+ +TLEA+E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct:   48 LGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
BLAST of CN187090 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  560 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 703
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 55          
The following BLAST results are available for this feature:
BLAST of CN187090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CYTI_VIGUN5.143e-2458.95Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ARATH1.954e-2350.98Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
CYT1_ORYSJ4.506e-2056.52Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT12_ORYSJ1.712e-1947.92Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]
SEP3_ARATH2.236e-19100.00Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
SEP1_ARATH2.236e-19100.00Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ2.236e-19100.00MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS7_ORYSJ2.236e-19100.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI2.236e-19100.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL9_SINAL2.236e-19100.00Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187090 ID=CN187090; Name=CN187090; organism=Citrus sinensis; type=EST; length=705bp
AGTCTTGTATATATATTAAACACCAAAGGTCATTTCAATTATTTTTCACA
CAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGACA
CATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATTT
ATTTTTATAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTCT
CTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAAG
CTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAACT
CCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTTC
TTCTGACCTCCTTCAACAGCCTCCAAGGTGATGTCGTACAGAGTCCCTGA
AACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAAT
TCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGATC
TCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAGC
CATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTT
TGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTC
TTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTG
TACGA
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