CK937031 | Citrus Genome Database

Overview


Name	CK937031
Unique Name	CK937031
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	871

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK937031_ssr504	microsatellite	CK937031_ssr504:504..515.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

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BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 3.268e-94
Identity = 98/141 (69.50%), Postives = 106/141 (75.18%), Query Frame = 3

Query:   63 MGLGLLASRAMRP----LKYSNSRVFIRSIVSKXXXXXXXXXXXXXXXXXXXXXXXRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 473
            MGLG+LASR +RP    L+   S  F+R+IVSK                       R+PVGGARVHF NPEDAIEVFVDGY +K+PKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG
Sbjct:    1 MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 141

HSP 2 Score: 174.866 bits (442), Expect = 3.268e-94
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1

Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            GMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR
Sbjct:  141 GMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 223

[Close]

BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.929e-91
Identity = 94/137 (68.61%), Postives = 100/137 (72.99%), Query Frame = 3

Query:   63 MGLGLLASRAMRPLKYSNSRVFIRSIVSKXXXXXXXXXXXXXXXXXXXXXXXRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 473
            MGLGLLASRA+R  +   +    R+IVS                        R PVGGARVH PNPED IEVFVDGYP+KIPKG TVLQACE+AGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG
Sbjct:    1 MGLGLLASRALRSSRIIRNST--RTIVSTPELKNADAAAAAAAADAPSDLPKRHPVGGARVHLPNPEDVIEVFVDGYPVKIPKGMTVLQACEIAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 135

HSP 2 Score: 174.866 bits (442), Expect = 1.929e-91
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1

Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            GMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR
Sbjct:  135 GMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 217

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BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.141e-61
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1

Query:  580 MKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            MKI T+TPL KKAREGV+EFLL+NHPLDCPICDQGGECDLQD +M +GSDRGRF E KR V DKN+GPLVKTVMTRCI CTR
Sbjct:   70 MKIFTNTPLVKKAREGVLEFLLVNHPLDCPICDQGGECDLQDLTMVYGSDRGRFHEYKRGVEDKNIGPLVKTVMTRCIHCTR 151

HSP 2 Score: 110.153 bits (274), Expect = 7.141e-61
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 3

Query:  270 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPAL 467
            + VFVDG  +++ KG T+LQAC   G++IPRFCYH RLSIAGNCRMCLVEVEKSPKPVASCAMP +
Sbjct:    2 VNVFVDGLSVEVKKGATILQACAQVGIEIPRFCYHERLSIAGNCRMCLVEVEKSPKPVASCAMPVM 67

[Close]

BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.246e-59
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1

Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FGSDR RF E KR+V DKN+GPLVKT+MTRCIQCTR
Sbjct:   99 GWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTR 181

HSP 2 Score: 108.997 bits (271), Expect = 2.246e-59
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 3

Query:  219 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 473
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G
Sbjct:   15 KSPKGYVRSTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKG 99

[Close]

BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.246e-59
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1

Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FGSDR RF E KR+V DKN+GPLVKT+MTRCIQCTR
Sbjct:   99 GWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTR 181

HSP 2 Score: 108.997 bits (271), Expect = 2.246e-59
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 3

Query:  222 SPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 473
            SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G
Sbjct:   16 SPKGYVRTTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKG 99

[Close]

BLAST of CK937031 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.246e-59
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query:  577 GMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTR 825
            G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+GPLVKT+MTRCIQCTR
Sbjct:   99 GWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTR 181