CX675235

Overview
NameCX675235
Unique NameCX675235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10390 contig Csv1_Contig10390:646..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675235 vs. ExPASy Swiss-Prot
Match: FB285_ARATH (F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.814e-110
Identity = 210/265 (79.25%), Postives = 221/265 (83.40%), Query Frame = 1
Query:   73 DDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 867
            D  E++QGGVTHHSPTQVLKNF+EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVILGA+SV+               P                   +DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD+DGQGVLCMNR+QLEELRVKPL+ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEVSD SWV SAFEEPY TAAKMLVKRRTYCLEMNSF
Sbjct:  146 DGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVI------------PPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSE---SKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF 395          
BLAST of CX675235 vs. ExPASy Swiss-Prot
Match: FB237_ARATH (F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 2.369e-110
Identity = 207/265 (78.11%), Postives = 223/265 (84.15%), Query Frame = 1
Query:   73 DDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 867
            DD E++QGGVTHHSPTQVLKNF+EI+FL+IELPSGELGIDDGVLLKWRA+FGSTL+NCVILGA+SV+    +   +  +  +                   A +DNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEV D SWV SAF+EPYG AAKMLVKRRTYCLEMNSF
Sbjct:  137 DDGEIEQGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSVIPPTNSDKTEASSAPV------------------AAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSE---SKKEVCDVSWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380          
BLAST of CX675235 vs. ExPASy Swiss-Prot
Match: FB19_ARATH (F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.805e-103
Identity = 194/260 (74.62%), Postives = 212/260 (81.54%), Query Frame = 1
Query:   88 DQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 867
            D+ GVTHHSPTQVLKNF EIRFL+IELP+GELGI+DG+LLKWRADFGSTLDNC+ILGA+SV+ +   K  +                           +DNG+IPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII EHK+LD LVL+DADGQGVLCMNREQLEELRV PLSASSASKRTLVPALNMRLWYAP L+LPDG VLKGATLVAIRPSE   SKKEV D SW+  AFEEP+GT AKML+KRRTYCLEMNSF
Sbjct:  146 DEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQSNSVKNHE-----------------------NSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASSASKRTLVPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE---SKKEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379          
BLAST of CX675235 vs. ExPASy Swiss-Prot
Match: FB91_ARATH (F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.242e-34
Identity = 86/259 (33.20%), Postives = 135/259 (52.12%), Query Frame = 1
Query:  112 SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPL-----SASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVS--DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 867
            +P Q+L  F  IR L +EL  G++ ++ G  +KW+A+FG TL +CVI+   S   N  A        D                         G +        GLK RVVWTIS+L+AAS RHYL++ ++ +HK ++ L++ D+DG+G + M+   ++E R   +      +    +RT+VP++ M + +AP L L  G+ L+ ATLV +RP+  ++   +V     ++ G   +  YG A   L+KRR   LEMNSF
Sbjct:  101 TPAQILSGFERIRNLEVELYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVD-------------------------GVVESDSEFVCGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYRETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDDNDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334          
BLAST of CX675235 vs. ExPASy Swiss-Prot
Match: FB303_ARATH (F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.768e-34
Identity = 92/259 (35.52%), Postives = 139/259 (53.67%), Query Frame = 1
Query:  115 PTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEEL-----RVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSE---QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 867
            P ++L  F+ IR L +ELP G++ ++ G  +KW+A+FG TL +CVI+   S            G    P                       G     F T  GLK RVVWTIS+L+AAS+RHYL++ ++ EH+ ++SLV+ D + +G + MN E L+EL     RV+       +KR++VP++ M + +AP L+L  G+ L+ ATLV +RPS    +     E++  ++VG      YG A   L+K +   LEMNSF
Sbjct:   91 PFKILSRFDRIRNLDVELPGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSA-----------GTVSSPVAV-------------------EGESDAEFVT--GLKTRVVWTISALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCKKNALEMNSF 314          
The following BLAST results are available for this feature:
BLAST of CX675235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FB285_ARATH1.814e-11079.25F-box protein At5g46170 OS=Arabidopsis thaliana GN... [more]
FB237_ARATH2.369e-11078.11F-box protein At4g18380 OS=Arabidopsis thaliana GN... [more]
FB19_ARATH2.805e-10374.62F-box protein At1g30200 OS=Arabidopsis thaliana GN... [more]
FB91_ARATH1.242e-3433.20F-box protein At1g78100 OS=Arabidopsis thaliana GN... [more]
FB303_ARATH2.768e-3435.52F-box protein At1g22220 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60G04-M8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675235 ID=CX675235; Name=CX675235; organism=Citrus sinensis; type=EST; length=890bp
GCCCCTGCCGCTTTCTGTGCGTCCTCTAGTTCGGGTTCGGGGACGACCTT
GTCGGTTGGTAGCAGCAGCGCCGACGATGAGGAAATGGATCAAGGAGGCG
TCACTCACCACTCTCCGACTCAAGTCCTGAAGAATTTTAACGAGATTCGG
TTTCTCCGGATTGAGTTGCCCAGCGGAGAGCTCGGCATCGACGATGGTGT
TTTGTTGAAATGGAGGGCTGATTTTGGCTCCACTCTTGACAACTGCGTCA
TCCTTGGGGCTGCTTCCGTTATGAACAACGTCCTTGCTAAAGCCCTCGAT
ATTGGAGCTACTGATTTGCCTTGTGTGAGTTCCAATAACAACAACAGCAA
CAATAACAATACCAATGTCAATGGTGCTACGGACGATAATGGAAGCATTC
CCGAGTCTTTTTACACCAACGGGGGTTTGAAGTTGCGTGTTGTGTGGACG
ATTAGCTCTTTAATTGCTGCATCTGCTAGGCATTATTTGCTTCAGCCAAT
TATAGCAGAGCACAAGACTCTTGATAGTTTGGTTTTAACTGATGCCGATG
GGCAAGGAGTGTTGTGTATGAACAGGGAGCAGCTTGAGGAGTTAAGAGTG
AAGCCTTTGTCGGCTTCTTCTGCATCCAAGAGGACGCTGGTGCCAGCTCT
CAATATGAGGCTTTGGTATGCGCCTTATTTGGAATTGCCTGATGGGGTTG
TGTTGAAAGGTGCAACCTTGGTTGCCATCAGGCCTAGCGAGCAATCTGCC
TCCAAGAAGGAGGTCTCTGATGGGTCTTGGGTTGGGTCCGCTTTTGAGGA
GCCGTATGGGACTGCAGCGAAGATGCTGGTCAAGAGGAGGACTTACTGTT
TGGAGATGAACTCTTTCTGATGAGGTTGCTCTGGCTTTGC
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