CK936986

Overview
NameCK936986
Unique NameCK936986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936986_ssr465 microsatellite CK936986_ssr465:465..476. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:151..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.937e-27
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   38 CISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          

HSP 2 Score: 25.7942 bits (55), Expect = 1.937e-27
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P T A++CGQV+ SLA
Sbjct:   21 PYTEALSCGQVSSSLA 36          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.433e-27
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:   13 CINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          

HSP 2 Score: 22.3274 bits (46), Expect = 9.433e-27
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            ITCGQV+ SLA
Sbjct:    1 ITCGQVSSSLA 11          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.228e-26
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   39 CIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          

HSP 2 Score: 26.5646 bits (57), Expect = 1.228e-26
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P+  AITCGQV+ +LA
Sbjct:   22 PIAQAITCGQVSSNLA 37          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.528e-26
Identity = 49/80 (61.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   39 CIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          

HSP 2 Score: 25.7942 bits (55), Expect = 3.528e-26
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P+  A+TCGQV+ +LA
Sbjct:   22 PIAQALTCGQVSSNLA 37          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.910e-25
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   37 CIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          

HSP 2 Score: 27.335 bits (59), Expect = 2.910e-25
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLA 173
            V +AITCGQVT SLA
Sbjct:   21 VAHAITCGQVTSSLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.122e-24
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   13 CIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          

HSP 2 Score: 21.1718 bits (43), Expect = 3.122e-24
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            ITCGQV+ +LA
Sbjct:    1 ITCGQVSSALA 11          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.356e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  172 LCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            LC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   38 LCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          

HSP 2 Score: 21.1718 bits (43), Expect = 4.356e-23
Identity = 7/13 (53.85%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  138 AITCGQVTGSLAM 176
            AI+CGQV+ ++A+
Sbjct:   26 AISCGQVSSAIAL 38          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.356e-23
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   13 CIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          

HSP 2 Score: 22.3274 bits (46), Expect = 4.356e-23
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            ITCGQV+ SLA
Sbjct:    1 ITCGQVSSSLA 11          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.611e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            C+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   40 CLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          

HSP 2 Score: 24.2534 bits (51), Expect = 1.611e-22
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            +TCGQVTG+LA
Sbjct:   28 LTCGQVTGALA 38          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.626e-22
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +++ GG  PP  CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:   13 CINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          

HSP 2 Score: 21.1718 bits (43), Expect = 1.626e-22
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  141 ITCGQVTGSLA 173
            ITCGQV+ +LA
Sbjct:    1 ITCGQVSSNLA 11          
The following BLAST results are available for this feature:
BLAST of CK936986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP_HELAN1.937e-2767.50Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI9.433e-2768.75Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU1.228e-2662.50Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV3.528e-2661.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO2.910e-2560.00Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE3.122e-2462.50Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_SORBI4.356e-2362.50Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_PRUAR4.356e-2360.00Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_DAUCA1.611e-2258.75Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO1.626e-2258.75Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936986 ID=CK936986; Name=CK936986; organism=Citrus sinensis; type=EST; length=680bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTATGCATCGCTTTCTTGAGAACTGGAGG
GCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAA
GCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCC
TCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACT
GCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTTTG
AGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAATTCTCCCTTA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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