CN187029

Overview
NameCN187029
Unique NameCN187029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_PHAVU (Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.208e-64
Identity = 126/163 (77.30%), Postives = 133/163 (81.60%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            +LGEALRRIREG AMIRTKGEAGTGNIIEAVRHVRSVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHF            +MMQLGCD            DP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NLSD  VERFA+RSE
Sbjct:  150 NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNVERFANRSE 312          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_HEVBR (Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.081e-63
Identity = 123/163 (75.46%), Postives = 135/163 (82.82%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            +LGEALRRIREG AMIRTKGEAGTGN+IEAVRHVRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDP++LAEVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  147 NLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDKKVERFANRSE 309          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX13_ARATH (Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.171e-62
Identity = 123/163 (75.46%), Postives = 133/163 (81.60%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            +LGEALRRIREG AMIRTKGEAGTGNIIEAVRHVRSV GDIRVLRNMDDDEVFTFAKK+AAPYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  147 NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEKVERFANRSE 309          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX11_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.294e-61
Identity = 120/163 (73.62%), Postives = 133/163 (81.60%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            DLGEALRRIREG AMIRTKGEAGTGN++EAVRHVRSVMGDIR LRNMDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV F            +MMQLGCD            DP +RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD KVERFA+RSE
Sbjct:  156 DLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 318          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX12_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.026e-58
Identity = 118/165 (71.52%), Postives = 132/165 (80.00%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK--VERFASRSE 497
            DLGEALRRIREG AMIRTKGEAGTGN++EAVRHVRSVMGDIR LR+MDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV F            +MMQLGCD            DP  RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD K  VERFA+RS+
Sbjct:  149 DLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKIHVERFAARSD 313          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX11_ARATH (Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.526e-57
Identity = 118/163 (72.39%), Postives = 130/163 (79.75%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            +LGEALRRIREG AMIRTKGEAGTGN++EAVRHVRSV G IR+LR+MDDDEVFT+AKKIAAPYDLV+QTK+LGRLPVV F            +MMQLGCD            DPVKRA+AIV+AVT+Y D  VLAEVSCGLGEAMVGLNL D KVERFASRSE
Sbjct:  148 NLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD-KVERFASRSE 309          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX1_GINBI (Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.350e-57
Identity = 111/163 (68.10%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 497
            +LGEALRRI EG AMIRTKGEAGTGN+IEAVRHVRSV+GDIR L+++DDDEVF FAK+IAAPY+LV QTKQLGRLPVV+F            +MMQLGCD            DP +RA+AIV+AVTHY+DP +LAEVSC LGEAMVG+NL D KVER+A RSE
Sbjct:  147 NLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDEKVERYAERSE 309          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDX12_ARATH (Probable pyridoxal biosynthesis protein PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.541e-43
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRS 494
            D GEALRRIREG AMIR +G+   TGNI E V++VRS+MG++RVL NMDDDEVFTFAKKI+APYDLV QTKQ+GR+PVV F            +MMQLGCD            DP K+ ++IV+AV HY+DP VLAE+S GL  AM  LN+   +++ F   S
Sbjct:  151 DTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDRIQDFGQGS 313          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_CHLSY (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            +LGEALRR+ EG AM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F            ++MQLG D            DPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     ++  +R
Sbjct:  130 NLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290          
BLAST of CN187029 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAA (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 3
Query:    9 DLGEALRRIREGVAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 491
            +LGEALRR+ EG AM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F            ++MQLG D            DPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     ++  +R
Sbjct:  130 NLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290          
The following BLAST results are available for this feature:
BLAST of CN187029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDX1_PHAVU6.208e-6477.30Pyridoxal biosynthesis protein PDX1 OS=Phaseolus v... [more]
PDX1_HEVBR3.081e-6375.46Probable pyridoxal biosynthesis protein PDX1 OS=He... [more]
PDX13_ARATH1.171e-6275.46Pyridoxal biosynthesis protein PDX1.3 OS=Arabidops... [more]
PDX11_ORYSJ1.294e-6173.62Probable pyridoxal biosynthesis protein PDX1.1 OS=... [more]
PDX12_ORYSJ1.026e-5871.52Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDX11_ARATH2.526e-5772.39Pyridoxal biosynthesis protein PDX1.1 OS=Arabidops... [more]
PDX1_GINBI7.350e-5768.10Probable pyridoxal biosynthesis protein PDX1 OS=Gi... [more]
PDX12_ARATH3.541e-4355.83Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_CHLSY1.030e-4253.42Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_CHLAA1.030e-4253.42Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003N02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187029 ID=CN187029; Name=CN187029; organism=Citrus sinensis; type=EST; length=794bp
GGCTGCCGGACTTGGGGGAAGCTTTGAGGAGGATTCGCGAAGGCGTGGCG
ATGATAAGAACGAAGGGCGAGGCCGGAACGGGGAATATTATCGAAGCGGT
GAGGCACGTGCGGTCTGTGATGGGGGATATTAGGGTTCTGAGGAACATGG
ACGATGACGAGGTGTTCACTTTCGCAAAGAAGATAGCGGCGCCGTACGAC
TTGGTGATGCAGACGAAGCAGCTGGGGCGGTTGCCGGTGGTGCACTTCGC
AGCGGGAGGAGTGGCGACGCCGGCGGATGCAGCGATGATGATGCAACTTG
GATGCGACGGAGTGTTTGTCGGGTCGGGCGTGTTTAAGAGCGGGGACCCG
GTGAAGCGGGCCCAGGCAATTGTACGGGCGGTGACTCATTACAGTGACCC
GGAGGTGTTGGCGGAGGTGAGCTGCGGGTTGGGCGAGGCCATGGTGGGTC
TTAATTTGAGTGACCACAAGGTTGAGAGGTTCGCTAGTCGCTCCGAATAA
ATGAAAGAGATGAGGTCCCGAAGCCCTTTATTAATCATTATCTGTAAGCT
TTTTCCTTTTTCTTTAAATCTTATGTAGTAAGCGGGATTCAAACTTCAAA
CCGCAGTAGTTGTCGTAATGTTTTCTTTGGGTGTTAGTTCAATTTACACA
ACTTGTCAATTGAAAACTCTGTTCTTCTTTACCAATATGAATATTTTACG
CTCGGAATGTTAAAAAAAAATTTTTTACAGGATGACCATTTTGTTTGATT
GGTTCAATATAAGTACAACATTAAGCTTGAGCTAAAGGGACCAA
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