CN187023

Overview
NameCN187023
Unique NameCN187023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.883e-50
Identity = 108/161 (67.08%), Postives = 116/161 (72.05%), Query Frame = -1
Query:  362 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGE-QWPSQIADGGWAGGEVQKPIPVVPYF-----PEAPAATVPLGGD 826
            LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR              A+DYA  +++    + + QWP  I D  W+   V +PIP VP        EAPAA    GGD
Sbjct:  128 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTI-DQSWSDA-VPQPIPAVPGVNWGAPAEAPAAA---GGD 283          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.057e-49
Identity = 101/141 (71.63%), Postives = 109/141 (77.30%), Query Frame = -1
Query:  407 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMN-LTSGEQWPSQIADGGWAGGEVQKPIPVVP 826
            LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG KWDVMVDLFFYR              A DYA A+++++ + S  QWP+ I D  W    V +PIP VP
Sbjct:  124 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAI-DQPW-NDAVPQPIPAVP 262          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.033e-48
Identity = 100/158 (63.29%), Postives = 106/158 (67.09%), Query Frame = -1
Query:  353 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGEQWPSQIADGGWAGGEVQKPIPVVPYFPEAPAATVPLGGDGWD 826
            LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG I  GHKW+VMVDLFFYR                DY     +  +   +QW + I D  W G  VQ     VP      A   P+ GDGWD
Sbjct:  121 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQW-NAIPDAQWGGDVVQPANSAVPAGTWTDAG--PIAGDGWD 275          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.429e-48
Identity = 106/168 (63.10%), Postives = 114/168 (67.86%), Query Frame = -1
Query:  353 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAI-DYATAEY---SMNLTSGEQWPSQIADGGWAGGEVQ--KPIPVVP---YFPEAP-AATVPLGGDGWD 826
            LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR TI PGHKWDVMVDLFFYR              A  DY   +Y   ++    G  W + I D    G +V    PIP VP   +   AP  + VP+  DGWD
Sbjct:  121 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWD 288          

HSP 2 Score: 21.557 bits (44), Expect = 1.429e-48
Identity = 7/16 (43.75%), Postives = 8/16 (50.00%), Query Frame = -3
Query:  255 ITAPDVSAAPQPTGWE 302
            +  P V   P P GWE
Sbjct:  297 VPPPVVEGVPPPAGWE 312          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.306e-45
Identity = 97/160 (60.62%), Postives = 108/160 (67.50%), Query Frame = -1
Query:  365 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVPYFPEA-----PAATVPLGG 826
            LLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI    KWDVMVDLFFYR                + A  +    +  G+QW  +QI+D  W+ GEV++PI   P           AA+VP  G
Sbjct:  126 LLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD------EEAEVQADYGMVGGDQWTTAQISDAAWS-GEVEQPISAAPAVGVTVAAGWEAASVPAAG 278          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.051e-45
Identity = 98/163 (60.12%), Postives = 105/163 (64.42%), Query Frame = -1
Query:  353 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSM---NLTSGEQW-PSQIADGGWAGGEVQKPIPVVPYFPEAPAATVPLGGD-GWD 826
            LLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP  KWDVMVDLFFYR                    AE+ +       G+QW  + I D  W  GE Q PI   P       +  P   + GWD
Sbjct:  122 LLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVA----PQAEFGLPAPEYGGGDQWTTAAIPDAAWP-GEAQAPISAAPAAGSWNDSAAPAAAEGGWD 279          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.544e-44
Identity = 101/164 (61.59%), Postives = 108/164 (65.85%), Query Frame = -1
Query:  353 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR-XXXXXXXXXXXXXXAIDYA---TAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVPYFPE-APAATVPLGGDGWD 826
            LLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI  G KWDVMVDLFFYR                 +Y      EY M    G+QW  +QI D  W  GE Q PI   P     + +A  P  G GW+
Sbjct:  125 LLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGM--VGGDQWTTAQIPDAAWP-GEGQAPISAAPAAASWSDSAAAPADG-GWE 284          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_OSTTA (40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            +L++TDPRTD QPI E A  NIPTIAFCDTDSP++ VDI IPANNK K SIGCL++LLARMVLQMRGTI P + WDVMVDLFFYR
Sbjct:  118 VLVVTDPRTDAQPISETAFVNIPTIAFCDTDSPLKNVDIAIPANNKAKQSIGCLYYLLARMVLQMRGTISPANPWDVMVDLFFYR 202          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_OSTLU (40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            +LI+TDPRTD QPI E A  N+PTIAFCDTDSP++ VD+ IPANNK KHSIGCL++LLARMVLQMRGT+   + WDVMVDLFFYR
Sbjct:  118 VLIVTDPRTDAQPISETAYVNLPTIAFCDTDSPLKNVDVAIPANNKAKHSIGCLYYLLARMVLQMRGTVSAANPWDVMVDLFFYR 202          
BLAST of CN187023 vs. ExPASy Swiss-Prot
Match: RSSA_CHLRE (40S ribosomal protein SA OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_126059 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.164e-30
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = -1
Query:  572 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 826
            LLILTDPRTDHQP+KE++  NIPTIAFCDTDSP+ +VD+ IPANNKGKHSIG L++LLARMVL+MR  I   + W V VDLFFYR
Sbjct:  116 LLILTDPRTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNKGKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYR 200          
The following BLAST results are available for this feature:
BLAST of CN187023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
RSSA_SOYBN1.883e-5067.0840S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_CICAR6.057e-4971.6340S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA_DAUCA1.033e-4863.2940S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA_VITVI1.429e-4863.1040S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA2_ARATH5.306e-4560.6340S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA_BRANA9.051e-4560.1240S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
RSSA1_ARATH1.544e-4461.5940S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA_OSTTA1.771e-3276.4740S ribosomal protein SA OS=Ostreococcus tauri GN=... [more]
RSSA_OSTLU5.152e-3274.1240S ribosomal protein SA OS=Ostreococcus lucimarin... [more]
RSSA_CHLRE2.164e-3072.9440S ribosomal protein SA OS=Chlamydomonas reinhard... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187023 ID=CN187023; Name=CN187023; organism=Citrus sinensis; type=EST; length=826bp
CATGTCGTATTGATAGATAAATTTAGATGACTCGGACAAATTTAACATAC
CAAAATATTAGGTACCATCATCATCATCAACAAAACCTAATTCTCAATGT
CTAGAACTATAACTGTGCCAAAAAAAAAAAGATAAAAAAAAAAAAAGAAC
AAAGCCATAGTACTTTGCCGAACATAAAGAAGTTCAAACTAAAACATAGT
TGTAGAAGAAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAA
ATTATTCCCAGCCAGTAGGTTGTGGGGCAGCAGAAACATCAGGAGCTGTA
ATGCTGCCATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACT
GCATCCCATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGG
GAAATAGGGAACAACAGGAATGGGCTTCTGAACTTCACCACCCGCCCACC
CACCATCAGCAATTTGGGAAGGCCATTGCTCACCACTGGTAAGATTCATG
CTGTACTCTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGC
CTGCTTGGTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACAT
CCCACTTGTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTA
GCCAAAAGCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGC
AGGAATGCCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGG
CAATGGTGGGAATGTTTCCAAGAGCAGCTTCCTTAATTGGCTGATGGTCT
GTTCGTGGATCTGTTAGAATGAGAAG
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