CN187021

Overview
NameCN187021
Unique NameCN187021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV  L+Q      EL + INP EA   GAA++ A+ SG  D     DLL + VTPL +G+   G     +IPRNTT+P +K+ +F+T  DNQ   LI V+EGE  + ++N+LLG F++TGIPP+P+GVP++NVC DIDA+ +L V
Sbjct:  349 PKVHQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGQGDEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQVNVCFDIDANGILNV 493          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV+ L+Q      EL + INP EA   GAA++GA+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  350 PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  +  +N+LLG F+++GIPP P+GVP+INVC DIDA+ +L V
Sbjct:  350 PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPGPRGVPQINVCFDIDANGILNV 494          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.466e-32
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  350 PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGGMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.720e-31
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = -2
Query:  260 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 736
            PKV+ L+Q      EL + INP EA   GAA++ A+ +G        DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F++TGIPP+P+GVP+INV  DIDA+ +L V       GN + +
Sbjct:  350 PKVQQLLQDFFNGKELNKSINPDEAVAYGAAVQAAILTGEGGEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVIFDIDANGILNVSAEDKTTGNKNKI 507          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.247e-31
Identity = 70/146 (47.95%), Postives = 95/146 (65.07%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  +  +N+LLG F+++GIPP+P+GVP+I VC DIDA+  L V
Sbjct:  350 PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGTLNV 494          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.456e-30
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +I RNTT+P +K+ VF+T  DNQ   LI V+EGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  350 PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  347 PKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  347 PKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN187021 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = -2
Query:  299 PKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 736
            PK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  347 PKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
The following BLAST results are available for this feature:
BLAST of CN187021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_SOYBN9.121e-3347.95Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP71_ARATH1.191e-3248.63Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP7E_SPIOL2.654e-3248.63Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_PETHY3.466e-3247.95Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP70_CHLRE1.720e-3145.28Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP72_SOLLC2.247e-3147.95Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP72_ARATH1.456e-3046.58Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP72_RAT1.902e-3047.62Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE1.902e-3047.62Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_HUMAN1.902e-3047.62Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003M21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187021 ID=CN187021; Name=CN187021; organism=Citrus sinensis; type=EST; length=764bp
TTTTCAAGACGCATCAAACAGCCTCTATTATTTCTTTATGATGCAAACCC
ATAAAGTAAATTTTTCTGAAGGATACAGACTCATATGCATACAACGCTTT
GAAAATATTAAAAAGCAATCAAATTTCAAGACACCATTACATTTTCTTCG
GCTGCACTGTCTCAAGGTCTAGAGTGGATCCATAAGCCCTGTTTAGAGCT
TCAGCACACCAGCCATGTCCATCATCAACCGTTGGCAGTCTCACTTCCAT
TACAGGAATCACTGGATGTGGGTTGCCAGGCATAATGACCCCAACCAAAA
CTCTCAGCACACTCGAGGCATCAATGTCCATGCACACATTTATTTCTGGT
ACTCCTTTGGGAGAGGGAGGAATTCCTGTTATCTTGAAATAGCCTAGAAG
ATGATTCTCTTCTACCTTCTCCCCTTCACCTTCATAAACAATAATCAGCG
CCTCAGACTGGTTGTCGCGAACTGTTGTGAAGACCAGATCTTTCCGTGCT
GGCATCGTGGTGTTTCTAGGAATGATGGGTACAAAGTTGTTGCCATTAGC
TCGTATACCAATGCCAAGTGGTGTGACTTGGATGGTTAACAGGTCCAGGT
TCCCAAATGGATCGTTAATGCCTGAAGTCACTGCTCCTTCCAGAGCTGCC
CCACTAACTGCTGCTTCCAATGGGTTAATACCCTCATAGAGTTCTACTTT
TTTGCATGTACTCTGGACAAGATTCCTTACTTTTGGAAAATATGAGGTTT
TTTTTTTTTTTTTT
back to top