CN187013

Overview
NameCN187013
Unique NameCN187013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187013 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.007e-57
Identity = 100/231 (43.29%), Postives = 135/231 (58.44%), Query Frame = 1
Query:   46 KEVSLMEIGSGNYGCSHYKRRCKIRAPCCGDIFNCRHCHNEAKNSLETNPLDRHDIPRHEIEKVICSLCGTEQDAQQYCINCGVCMGKYYCAKCKFFDDDITKNQYHCDECGICRTGGKDNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCND 738
            +E  +  +  G  GC HY R C ++APCC  ++ CR CH       +TN  + H + R ++++V C  C   Q AQQ C +C    G+YYC+ C  FD D  K QYHC+ CGICR G K++FFHC  C  C +  ++ KH+C+E     NCPIC E I  +     VL CGH +H  C +EM K   Y CP+C  S  DM++ W ++D E+A TPMP+ YQN  V ILCND
Sbjct:    6 REDGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCH-------DTN--EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCND 224          
BLAST of CN187013 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.233e-55
Identity = 96/221 (43.44%), Postives = 128/221 (57.92%), Query Frame = 1
Query:   76 GNYGCSHYKRRCKIRAPCCGDIFNCRHCHNEAKNSLETNPLDRHDIPRHEIEKVICSLCGTEQDAQQYCINCGVCMGKYYCAKCKFFDDDITKNQYHCDECGICRTGGKDNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCND 738
            G  GC HY R C ++APCC  ++ CR CH+  ++         H + R ++++V C  C   Q AQQ C  C    G+YYC  C  FD D  K QYHC+ CGICR G K++FFHC  C  C +  ++ +H+C+E     NCPIC E I  +     VL CGH +H  C +EM K   Y CP+C  S  DM++ W ++D E+A TPMP+ YQN  V ILCND
Sbjct:   16 GQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNED---------HQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCND 224          
BLAST of CN187013 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 100/245 (40.82%), Postives = 143/245 (58.37%), Query Frame = 1
Query:   10 SSYESEGTYFQEKEVSLMEIGSGNYGCSHYKRRCKIRAPCCGDIFNCRHCHNEAKNSLETNPLDRHDIPRHEIEKVICSLCGTEQDAQQYCINCGVCMGKYYCAKCKFFDDDITKNQYHCDECGICRTGG--KDNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCND 738
            SS + E TY+ +++  L        GCSHY R CK++   C + + CRHCHN+A +         H + R  +E ++C +C   Q A QYC  C  CMG+YYC KCK +DDD  K+ YHCD+CGICR G    D++FHCKTCG C    + + HRC+ER+   NCPIC E++F++ + +  L C H +H  C +E  +   Y CP C K++ +++ L+  +D EI   PMP  Y   +  I CND
Sbjct:  124 SSSDLEKTYYDKEQEIL--------GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCND 350          
The following BLAST results are available for this feature:
BLAST of CN187013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_MOUSE5.007e-5743.29RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN1.233e-5543.44RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO2.747e-5540.82Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187013 ID=CN187013; Name=CN187013; organism=Citrus sinensis; type=EST; length=738bp
ATTATGGGGTCGTCTTATGAATCAGAAGGTACTTATTTTCAGGAAAAAGA
AGTGTCTTTGATGGAGATTGGATCTGGGAATTATGGGTGCTCACACTATA
AGAGGAGATGCAAGATCAGAGCACCTTGTTGTGGTGACATTTTTAATTGC
AGGCATTGCCATAATGAAGCTAAGAATTCTCTGGAAACCAATCCTCTTGA
TCGTCATGATATCCCACGCCATGAAATTGAAAAGGTTATTTGCTCCCTTT
GCGGCACGGAACAAGATGCTCAACAGTATTGCATAAACTGTGGAGTTTGT
ATGGGGAAGTACTATTGTGCAAAGTGCAAATTCTTCGATGATGATATAAC
AAAGAATCAATACCACTGTGATGAATGTGGAATCTGCAGAACTGGAGGCA
AGGATAATTTCTTCCATTGTAAAACTTGTGGATGTTGCTACTCAAAGGAA
ATGAAGGATAAACATCGTTGTGTGGAGAGAGCAATGCACCACAATTGCCC
CATTTGCTTTGAGTTTATATTTGACACCATGAAAGATATTACCGTCTTAC
GTTGTGGACACACAATACATTTAGAATGTTTGAAAGAGATGGAAAAGCAT
TACCGATACACATGCCCTGTTTGCTCAAAGTCCCTCTGGGACATGTCCAA
GTTGTGGTCAAAGATCGATCAGGAGATTGCCTCAACTCCGATGCCAGCAA
TGTACCAAAATAAGATGGTGTGGATTCTCTGCAATGAC
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