CN187012

Overview
NameCN187012
Unique NameCN187012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187012 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.604e-37
Identity = 69/146 (47.26%), Postives = 88/146 (60.27%), Query Frame = -1
Query:  330 RTGGKDNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRG 767
            R G K++FFHC  C  C +  ++ KH+C+E     NCPIC E I  +     VL CGH +H  C +EM K   Y CP+C  S  DM++ W ++D E+A TPMP+ YQN  V ILCNDC   S VQFH++  KC  C SYNT Q  G
Sbjct:  109 RIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of CN187012 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.604e-37
Identity = 68/146 (46.58%), Postives = 89/146 (60.96%), Query Frame = -1
Query:  330 RTGGKDNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRG 767
            R G K++FFHC  C  C +  ++ +H+C+E     NCPIC E I  +     VL CGH +H  C +EM K   Y CP+C  S  DM++ W ++D E+A TPMP+ YQN  V ILCNDC   S VQFH++  KC  C+SYNT Q  G
Sbjct:  109 RIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of CN187012 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  345 DNFFHCKTCGCCYSKEMKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 752
            D++FHCKTCG C    + + HRC+ER+   NCPIC E++F++ + +  L C H +H  C +E  +   Y CP C K++ +++ L+  +D EI   PMP  Y   +  I CNDC +    ++H + HKC SC SYNT
Sbjct:  240 DDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of CN187012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_MOUSE3.604e-3747.26RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN3.604e-3746.58RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO1.242e-2940.44Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187012 ID=CN187012; Name=CN187012; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTTTTTTGAAAGACTTTTCTATCCATTTATACCATTTGCA
AGAATGAATCAAGAGAACAACTGAATTCAACCCTTTTACTAAACACGCTT
TGACTAAATTCCTACTAACAAAGGTGTATTTACAGAGATATAACATTGAT
CACACAGACATTGATAGATCTAGAATTCTGAACAGTATAGCTGTTTTCCT
GCTGCTACAGAGGCATGTTGTTGGTAATCCCAATGATGGGAAAGAATGGT
TAGTTCATCCTGAAGCTTTGACTTTCTGGAGCTAACTCACAATCTCAGCC
ACCCCAGATGAGCATGTAGTTGCCGTATCTCCTCTTGTTTGTCTTGTATT
GTAGGACTTGCAGCTGAGGCATTTATGAGCTATAACGTGGAACTGAACAT
GTGAGTTTGCACCGCAATCATTGCAGAGAATCCACACCATCTTATTTTGG
TACATTGCTGGCATCGGAGTTGAGGCAATCTCCTGATCGATCTTTGACCA
CAACTTGGACATGTCCCAGAGGGACTTTGAGCAAACAGGGCATGTGTATC
GGTAATGCTTTTCCATCTCTTTCAAACATTCTAAATGTATTGTGTGTCCA
CAACGTAAGACGGTAATATCTTTCATGGTGTCAAATATAAACTCAAAGCA
AATGGGGCAATTGTGGTGCATTGCTCTCTCCACACAACGATGTTTATCCT
TCATTTCCTTTGAGTAGCAACATCCACAAGTTTTACAATGGAAGAAATTA
TCCTTGCCTCCAGTTCT
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