CN187005

Overview
NameCN187005
Unique NameCN187005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN187005 vs. ExPASy Swiss-Prot
Match: SSM1_YEAST (Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 57/173 (32.95%), Postives = 89/173 (51.45%), Query Frame = -3 
Query:  351 YDIGADDYHGFVHGRLPY-DFIKPDPQLRNLLCSITQR-KI----IFTNSDRNHAITCLKRLGIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGKALGLRTV--LVGKTVN-----VGEADYALENVNNLPQVVPEIW 827
            + + A +Y+  V   LP  D +KPD  LRN+L  + Q  KI    +FTN+ +NHAI CL+ LGIAD FD +             +R D   ++ KP + A + A+  + +    +A F+DD+ KN+  G  LG++T   LV   VN       E    + ++  LP VV +++
Sbjct:  118 HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGL--------TYCDYSRTD--TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF 280
[Close]
BLAST of CN187005 vs. ExPASy Swiss-Prot
Match: PHM8_YEAST (Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae GN=PHM8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = -3 
Query:  381 YHGFVHGRLPY-DFIKPDPQLRNLLCSITQRKI-------IFTNSDRNHAITCLKRLGIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGKALGLRTVLVGKTVNVGEADYALENVN 806
            Y+ F+   LP  D++KPD +LR LL ++ ++K+       +FTNS +NHAI C+K LGIAD FD I              RP E   + KP     + A   + +    +A F+DDN  NV +  ++G+     G  +++ E DY  E+ N
Sbjct:  123 YNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVKILGIADLFDGI--------TYCHYDRPIEEEFICKPDPKFFETAKLQSGLSSFANAWFIDDNESNVRSALSMGM-----GHVIHLIE-DYQYESEN 259
The following BLAST results are available for this feature:
BLAST of CN187005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSM1_YEAST1.769e-1132.95Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 P... [more]
PHM8_YEAST8.781e-1133.77Phosphate metabolism protein 8 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187005 ID=CN187005; Name=CN187005; organism=Citrus sinensis; type=EST; length=847bp
CTTTTTTTCAACAGCGATGCTGTCACAATCATATGGGCGAAGCTTCTCGA
TTACAGCAAGACCATAGTTTGGTGTTTTGTGACAACGGTTGCAATATTAT
TCAATACACGTAGCAAAGTTACATAATTTGAGAGCATATACATTTTATTT
TCAAATATGGACAGCACGTTAACATTCATGATACATATCAACAGTTGTAG
AAACTGATTAACATGATATCTACACAGTGGGGCCCTAACCGAAACACGAA
CGGTTCTGATCTAGGCTCCCACTGGCGTGGTAGTGAGAATGGATTCCAAT
TCACTTCTGGTGCGGCTGATCCTTTGATCGCCATCGTCCGATTGGCTGAC
CCATATCTCTGGAACCACTTGAGGTAAGTTGTTGACATTCTCTAATGCAT
AATCCGCTTCACCGACGTTCACCGTCTTCCCAACCAAAACGGTGCGTAGT
CCTAAAGCCTTGCCGGCGGTGACATTTTTAATGTTGTCGTCAAGAAACAA
GGCGTGACGAGGATCAACATTAGCAACATGGAGGGCGAGTTTCATGGCGT
CCATTGAAGGCTTCAAAAGGACGGGGAATTCATCGGGACGAGTTGCTTTC
GAGAGATTCGGGTTCATTGTCTCGAAACAGATTATTTGATCGAAACAATC
TGCTATTCCTAGTCGTTTCAGACATGTAATTGCATGGTTCCTGTCCGAAT
TGGTGAAAATAATCTTTCTCTGGGTGATGCTGCATAAGAGGTTGCGTAGT
TGAGGATCTGGTTTGATAAAATCATACGGCAATCTTCCGTGCACGAAACC
GTGGTAATCATCGGCACCAATATCATAGCCCAGAGCTCGCAAGCCAG
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