CN186994

Overview
NameCN186994
Unique NameCN186994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186994 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 69/220 (31.36%), Postives = 109/220 (49.55%), Query Frame = 1 
Query:   91 MMMAECAQVGLMFAGKAAMSDGMSNLVFVFYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYA-GIYYSSPTLSTAMLNLVPGFTFILAIIFGMEKLDWKSSSSLAKSVGTIVLITGAFIMAYCKGPHLLMTSSPP-NLSLQFF---------VPQTNWVIGGLLLAIDCVFTSAWLIVQASILKKFSAELIVVFFYCFFVAIQ 717
            M+  +    G     +AA++ G+S +VF  Y N  A +++ P +    + + P LTL  L  FFLL   G + Q    +  I    PT ++A+ N VP  TFI+A    +EK+       LAK +GT+  ++GA I+   KGP +     P   ++  +F             NW +G + L  +C+  S W+++QA +LK++ A L V  F CFF  IQ
Sbjct:   23 MLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQ 242
The following BLAST results are available for this feature:
BLAST of CN186994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA6.300e-2531.36Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186994 ID=CN186994; Name=CN186994; organism=Citrus sinensis; type=EST; length=722bp
ATTATCTTTCTGCCCCAAATTCCAGAGCCCGTACTGGCCATCGGAGGGAG
AGAAGAGATGGGAAAAGTTGGTTTAGCGCCAGTTATTGGGATGATGATGG
CAGAGTGCGCTCAAGTTGGGCTGATGTTTGCCGGCAAAGCAGCCATGTCT
GATGGGATGAGCAACCTGGTCTTCGTTTTTTACTCCAACGCATTCGCCTC
TCTCGTTCTCCTCCCCGCTTCACTTCTCTTCCACAGATCACAAATTCCTC
CACTCACTTTGCCTATTCTATCTGCTTTCTTCCTACTTGGCTTTCTTGGT
ACTTCGTCTCAGTTTTTTGGCTACGCTGGGATTTACTATAGCTCACCTAC
ACTTTCCACGGCTATGCTTAATCTTGTTCCGGGTTTTACCTTCATTCTTG
CCATCATTTTCGGGATGGAAAAACTAGACTGGAAAAGCTCCAGTAGCCTA
GCCAAATCAGTGGGAACCATAGTGTTAATTACAGGGGCATTTATCATGGC
ATACTGTAAGGGACCCCACCTTCTGATGACATCTTCGCCTCCAAACTTGT
CCCTTCAATTTTTCGTGCCGCAAACAAACTGGGTCATTGGTGGATTGCTC
CTTGCCATTGATTGTGTGTTCACTTCAGCATGGCTCATTGTACAGGCCTC
AATCCTTAAGAAATTCTCAGCTGAGCTGATCGTCGTCTTTTTTTACTGCT
TCTTTGTGGCCATTCAATCTGC
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