CK936905

Overview
NameCK936905
Unique NameCK936905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  285 ARGTHVR----MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTY+TPE AA AYDRAAF++RGSKAKLNFPHLIGS    PVR+  +R
Sbjct:   79 ASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRR 166          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.215e-29
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  138 LHDGVNGGWISFDDQLG------RNNDIGSAIANIDTSMTSXXXXXXXXXXQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            L D +N GW  F+   G      R  +I  + A    +  +            ++ RG H    YRGVRRRPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSKA LNFPH IG N   PVRVT KR
Sbjct:   57 LKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAA------------ELPRGRH----YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKR 179          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.292e-28
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 3
Query:  273 QMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            Q  V +G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSKA LNFPH IG N   PVR+T KR
Sbjct:   90 QAVVPKGRH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKR 173          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 3
Query:  273 QMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            Q  V +G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSKA LNFPH IG N   PVR+T KR
Sbjct:   94 QAVVPKGRH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKR 177          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:  312 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            YRGVR+RPWGKFAAEIRDP KNGARVWLGTY++ E AA AY +AAF+MRG+KA LNFPH IG N   PVRVT KR
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKR 181          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.241e-26
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  285 ARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            A+G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS+A LNFP  + S    PVR+  KR
Sbjct:  143 AKGKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKR 222          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.097e-25
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  312 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 536
            YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYD AAF+MRGS+A LNFP  + S    PVR+T KR
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKR 191          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  309 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 485
            +YRGVRRRPWGK+AAEIRD  ++GARVWLGT++T E AA AYDRAAF+MRG+KA LNFP
Sbjct:   58 KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  309 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 488
            +YRGVRRRPWGK+AAEIRD +K+G RVWLGT+DT E AA AYDRAA+ MRG  A LNFPH
Sbjct:   19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78          
BLAST of CK936905 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 3
Query:  306 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 488
            M+YRGVR+RPWGK+AAEIRD  ++GARVWLGT++T E AA AYDRAAF MRG +A LNFPH
Sbjct:   12 MKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPH 72          
The following BLAST results are available for this feature:
BLAST of CK936905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ERF99_ARATH9.940e-3276.14Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC1.215e-2952.52Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_TOBAC2.292e-2870.45Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY2.993e-2870.45Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_SOLLC7.372e-2776.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF100_ARATH6.241e-2667.86Ethylene-responsive transcription factor 1A OS=Ara... [more]
EF101_ARATH3.097e-2572.00Ethylene-responsive transcription factor 2 OS=Arab... [more]
PTI5_SOLLC1.031e-2076.27Pathogenesis-related genes transcriptional activat... [more]
ERF97_ARATH1.759e-2075.00Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF95_ARATH1.759e-2073.77Ethylene-responsive transcription factor ERF095 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004516_G04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936905 ID=CK936905; Name=CK936905; organism=Citrus sinensis; type=EST; length=759bp
GCGGGCCTTCAGNNNCATTACCAATCAACAATAATGAAACATTAAATTCC
CCTGTTTCGAGCTTCAATAGTTTCTCCTTCACAGAGAATATCAATGAGTA
TCTATCACAAGGGGTTAGCTCTAGCTCGCACTCCTCCTTACATGACGGCG
TCAATGGAGGGTGGATTTCGTTTGATGATCAGCTTGGTCGTAATAATGAT
ATTGGAAGTGCAATAGCAAATATTGATACGAGTATGACTTCTCCTCCTCA
TCCTCCTCCTCTTCCAACTCCACAGATGGATGTGGCACGTGGGACTCACG
TGAGGATGCAGTATAGAGGCGTGAGGAGGAGGCCGTGGGGGAAGTTTGCT
GCGGAGATAAGGGACCCTAAGAAGAATGGGGCAAGAGTTTGGCTGGGCAC
CTATGATACCCCTGAGGGTGCAGCATTTGCTTATGATAGAGCCGCTTTCA
AGATGCGAGGCTCCAAGGCTAAGCTCAATTTTCCTCACCTCATTGGCTCA
AATGTTGAGCCCCCGGTTAGGGTTACCAAGAAGCGTGGGTCTCCAGAGCC
TCCTTCCTCTTCTTCGTCTCTTTCTTCATCATCATCCGTTGTGTCCTTTA
GACCCGGGTGAATTAATTATTAGTATCAGAGCTGCTTTGCTTAATTTTCT
TAGATTCAAATTTACATAACATGTAATCGTACTTCTTCTTAATAATTTCT
TTTCAAATCGATTGCCCCGTTTACCCCCCGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top