EL492607

Overview
NameEL492607
Unique NameEL492607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: CYCA_ECOLI (D-serine/D-alanine/glycine transporter OS=Escherichia coli (strain K12) GN=cycA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.501e-24
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+VG  +    FQ P +GV A SF+HLW+ GG+FP G  GF AGFQIA+F+F GIE+ GT AAET DPE +LP+AINSIP R+++FYV  L VI
Sbjct:  175 LIVVGLVMVAMHFQSP-TGVEA-SFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVI 267          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: CYCA_ECO57 (D-serine/D-alanine/glycine transporter OS=Escherichia coli O157:H7 GN=cycA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.501e-24
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+VG  +    FQ P +GV A SF+HLW+ GG+FP G  GF AGFQIA+F+F GIE+ GT AAET DPE +LP+AINSIP R+++FYV  L VI
Sbjct:  175 LIVVGLVMVAMHFQSP-TGVEA-SFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVI 267          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: YDGF_BACSU (Uncharacterized transporter ydgF OS=Bacillus subtilis GN=ydgF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I++G  +   GF    SGV  +SF++LW  GG FP G  GFI  FQ+ +F+F GIE+ G  A ET +PE  +PKAIN+IP RVL+FY+  L VI
Sbjct:  171 LIVIGLVMIFKGFSTS-SGV--SSFTNLWSHGGLFPNGMHGFILSFQMVVFAFVGIELVGLTAGETENPEKVIPKAINNIPVRVLLFYIGALLVI 262          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_SHIFL (Aromatic amino acid transport protein aroP OS=Shigella flexneri GN=aroP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.351e-18
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+ GG+L  +G     +G P AS S+LWD+GGF P GF G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  167 MIIFGGWLLFSG-----NGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_ECO57 (Aromatic amino acid transport protein aroP OS=Escherichia coli O157:H7 GN=aroP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.351e-18
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+ GG+L  +G     +G P AS S+LWD+GGF P GF G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  167 MIIFGGWLLFSG-----NGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_ECOLI (Aromatic amino acid transport protein aroP OS=Escherichia coli (strain K12) GN=aroP PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.860e-17
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+ GG+L  +G     +G P A+ S+LWD+GGF P GF G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  167 MIIFGGWLLFSG-----NGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 256          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AAPA_BACSU (Amino-acid permease aapA OS=Bacillus subtilis GN=aapA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.430e-17
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = -3
Query:   10 ILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 291
            ++V G L I       SG   AS ++LW  GG FP G+ GFI  FQ+ +F+F GIE+ G  A ET +P+  +PKAIN IP R+L+FYV  L VI
Sbjct:  172 LIVTGILLIAKGFSAASG--PASLNNLWSHGGMFPNGWHGFILSFQMVVFAFVGIELVGLTAGETENPQKVIPKAINQIPVRILLFYVGALFVI 263          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: AROP_ECOL6 (Aromatic amino acid transport protein aroP OS=Escherichia coli O6 GN=aroP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.145e-17
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = -3
Query:   10 VILVGGYLAITGFQPPRSGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 294
            +I+ G +L  +G     +G P AS S+LWD+GGF P GF G +    I +FSF G+E+ G  AAE  +PE ++PKA N +  R+LIFY+ +L V+
Sbjct:  166 MIIFGAWLLFSG-----NGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVL 255          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: PROY_SALTY (Proline-specific permease proY OS=Salmonella typhimurium GN=proY PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.741e-15
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = -3
Query:   10 SGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 243
            +G       +LW  GGFF  G++G I   Q+ +F++ GIE+ G  A E  DPE ++P+AINS+P R+L+FYV TL VI
Sbjct:  177 NGGQPTGIHNLWSNGGFFSNGWLGMIMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVI 254          
BLAST of EL492607 vs. ExPASy Swiss-Prot
Match: PROY_ECOLI (Proline-specific permease proY OS=Escherichia coli (strain K12) GN=proY PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.274e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = -3
Query:   10 SGVPAASFSHLWDRGGFFPTGFMGFIAGFQIAIFSFQGIEMAGTAAAETADPEHNLPKAINSIPARVLIFYVLTLGVI 243
            +G       +LW  GGFF  G++G +   Q+ +F++ GIE+ G  A E  DPE ++P+AINS+P R+L+FYV TL VI
Sbjct:  177 NGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVI 254          
The following BLAST results are available for this feature:
BLAST of EL492607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CYCA_ECOLI3.501e-2458.95D-serine/D-alanine/glycine transporter OS=Escheric... [more]
CYCA_ECO573.501e-2458.95D-serine/D-alanine/glycine transporter OS=Escheric... [more]
YDGF_BACSU1.288e-1849.47Uncharacterized transporter ydgF OS=Bacillus subti... [more]
AROP_SHIFL8.351e-1845.26Aromatic amino acid transport protein aroP OS=Shig... [more]
AROP_ECO578.351e-1845.26Aromatic amino acid transport protein aroP OS=Esch... [more]
AROP_ECOLI1.860e-1744.21Aromatic amino acid transport protein aroP OS=Esch... [more]
AAPA_BACSU2.430e-1747.87Amino-acid permease aapA OS=Bacillus subtilis GN=a... [more]
AROP_ECOL64.145e-1744.21Aromatic amino acid transport protein aroP OS=Esch... [more]
PROY_SALTY1.741e-1546.15Proline-specific permease proY OS=Salmonella typhi... [more]
PROY_ECOLI2.274e-1544.87Proline-specific permease proY OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC4110 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4110, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492607 ID=EL492607; Name=EL492607; organism=Citrus sinensis; type=EST; length=296bp
TGACTGCCTGATGACGCCTAGGGTCAGAACATAGAAGATAAGGACACGAG
CCGGGATTGAGTTGATAGCCTTAGGAAGATTGTGTTCAGGGTCTGCTGTT
TCCGCTGCTGCGGTGCCTGCCATCTCAATACCTTGGAACGAGAAAATGGC
AATTTGGAAGCCGGCTATGAATCCCATGAATCCGGTGGGGAAGAACCCGC
CACGGTCCCACAAATGAGAAAATGACGCAGCCGGAACCCCGCTGCGGGGT
GGCTGGAACCCGGTGATCGCAAGGTAGCCGCCGACAAGGATTACTA
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