CK936854

Overview
NameCK936854
Unique NameCK936854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936854_ssr619 microsatellite CK936854_ssr619:619..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1974 contig Csv1_Contig1974:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK1_SOYBN (Probable phytol kinase 1, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.358e-59
Identity = 116/165 (70.30%), Postives = 133/165 (80.61%), Query Frame = 3
Query:  165 PARVSLDPHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            P  V LD    RF V  A     LL++AGAT  VL G Y LV +FD L++R ++QQ LSRKLVHILSGLLF+VSWPIFS S +ARYFAA VPLVNCLRL++NGLSL  D+GLIKSVTREG+P ELLRGPLYYVL+LILSALVFWR+SP+GVISL+MMC GDG AD
Sbjct:   43 PPAVRLDQRLPRFVVPGAG-AEDLLYNAGATVGVLGGGYALVRAFDELTRRNILQQGLSRKLVHILSGLLFLVSWPIFSNSPKARYFAAFVPLVNCLRLLVNGLSLASDEGLIKSVTREGDPLELLRGPLYYVLILILSALVFWRESPIGVISLAMMCAGDGIAD 206          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK1_ARATH (Phytol kinase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE5 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.215e-55
Identity = 108/154 (70.13%), Postives = 129/154 (83.77%), Query Frame = 3
Query:  198 RFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            R  +S+A     LLHD GAT AVL GAY LVLSF++L++R +IQQSLSRKLVHILSGLLF+++WPIFS STEARYFAA VPLVN LRLVINGLS+  +  LIKSVTREG  +ELL+GPL+YVL L+ SA+ FWR+SP+G+ISL+MMCGGDG AD
Sbjct:   55 RSLISSAVATNSLLHDVGATVAVLGGAYALVLSFESLTKRNVIQQSLSRKLVHILSGLLFVLAWPIFSGSTEARYFAAFVPLVNGLRLVINGLSISPNSMLIKSVTREGRAEELLKGPLFYVLALLFSAVFFWRESPIGMISLAMMCGGDGIAD 208          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK1_ORYSJ (Probable phytol kinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0670700 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.375e-51
Identity = 94/149 (63.09%), Postives = 120/149 (80.54%), Query Frame = 3
Query:  213 AAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            AA+     L D  AT  +  GAY LV +FD L+ R+LI+Q+LSRK+VH+LSG+LFM SWP+FS STEAR+FAA+VPL+NC+RL+  GL L  D+ L+KSVTREG P+ELLRGPLYYV++L++S LVFWR SP+G++SLSMM GGDG AD
Sbjct:   66 AASATPAALRDCAATLLITAGAYSLVRAFDGLTARRLIEQNLSRKIVHVLSGVLFMSSWPLFSNSTEARFFAAIVPLLNCIRLLTYGLRLSTDEALVKSVTREGKPEELLRGPLYYVIVLLVSVLVFWRQSPIGIVSLSMMSGGDGFAD 214          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK_MAIZE (Probable phytol kinase, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.146e-50
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 3
Query:  213 AAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            AAA    +L D   T  +  GAY LV  FD L++R+LI++SLSRK+VH+LSG+LFM SWP+FS STEARYFAA+VP +N +RL+I GL L  D+ L+KSVTREG P+ELLRGPLYYVL+L+ S LVFWR+SP+G++SLSMM GGDG AD
Sbjct:   53 AAAAPPAVLQDGAVTVLITAGAYSLVRVFDELTERRLIEKSLSRKVVHVLSGVLFMSSWPLFSNSTEARYFAAVVPFLNSMRLLIYGLRLYTDEALVKSVTREGKPEELLRGPLYYVLVLLFSVLVFWRESPIGIVSLSMMSGGDGFAD 201          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK_WHEAT (Probable phytol kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.154e-50
Identity = 91/142 (64.08%), Postives = 115/142 (80.99%), Query Frame = 3
Query:  234 LLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            LL D GAT  V  GAY LV +FD L++R+L+QQSLSRK+VH+LSG+ FM SWP+FS ST AR+FAA+VP +NC+RL+  GL    D+ L+KSVTREG  +ELLRGPLYYV++L++  LVFWRDSP+G++SLSMM GGDG AD
Sbjct:   60 LLRDGGATLLVTAGAYSLVRAFDALTERRLVQQSLSRKVVHVLSGVFFMASWPLFSNSTSARFFAAVVPFLNCVRLLTYGLGFYSDEALVKSVTREGKREELLRGPLYYVIVLLIIVLVFWRDSPIGIVSLSMMSGGDGFAD 201          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK2_SOYBN (Probable phytol kinase 2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.261e-42
Identity = 87/149 (58.39%), Postives = 109/149 (73.15%), Query Frame = 3
Query:  213 AAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            AAA    +L D   T  +  GAY LV  FD L++R+LI++SLSRK+VH+LSG+LFM SWP+FS STEARYFAA+VP +N +RL+I GL L  D+ L           ELLRGPLYYVL+L+ S LVFWR+SP+G++SLSMM GGDG AD
Sbjct:   53 AAAAPPAVLQDGAVTVLITAGAYSLVRVFDELTERRLIEKSLSRKVVHVLSGVLFMSSWPLFSNSTEARYFAAVVPFLNSMRLLIYGLRLYTDEAL-----------ELLRGPLYYVLVLLFSVLVFWRESPIGIVSLSMMSGGDGFAD 190          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK2_ORYSJ (Probable phytol kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0832000 PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.231e-31
Identity = 70/198 (35.35%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 RHPISGRHVGSAATHVFPISPRVFRGSMSVWPARVSLDPHTLRFRVSAAA--RVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            R P+S     +AA+  F + PR         P R+  D    +  ++AA       L HD G+ A     A  L+  F+ L++R + +Q L+RKLVHI  G++F++ WP+FS+ + A + AA+ P +N +R+++ GL ++K++ ++KS++R G+P+ELL+GPLYY   +  +  +FWR SP+ +  +  +C GDG AD
Sbjct:   24 RPPLSPPAAAAAASCSFDL-PR---------PRRLVADGSRRKGTMAAAIPPEASGLAHDLGSAAVTAGVALALLRFFEELAKRGVFEQKLNRKLVHITIGMVFLLFWPLFSSGSYAPFLAAVAPGINIIRMLLLGLGVMKNEAMVKSMSRSGDPRELLKGPLYYATTITFATSIFWRTSPIAIALICNLCAGDGIAD 211          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK3_SOYBN (Probable phytol kinase 3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 63/142 (44.37%), Postives = 96/142 (67.61%), Query Frame = 3
Query:  234 LLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            L+ D  ATA   V A   +  F   ++R L  Q L+RKLVHI  GL+FM+  P+FST T A +FAAL+P +N  R+++ GL ++KD+  +KS++R G+ +ELL+GPLYY   + L+A+++WR SP+ + ++  +C GDG AD
Sbjct:   85 LVSDVYATAISGVVALSFLRLFQETAKRDLFDQKLNRKLVHISIGLIFMLCXPLFSTETWASFFAALIPGINIFRMLVIGLGILKDEATVKSMSRFGDYRELLKGPLYYAATITLAAIIYWRTSPISIAAICNLCAGDGMAD 226          
BLAST of CK936854 vs. ExPASy Swiss-Prot
Match: PHYK2_ARATH (Probable phytol kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g58560 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  234 LLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQSLSRKLVHILSGLLFMVSWPIFSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGXAD 659
            +L D  A     + A+  +  +  + +R +  Q L RKLVHI  GL+FM+ WP+FS+  +   FA+LVP +N +R+++ GL +  D+G IKS++R G+ +ELL+GPLYYVL +  + + +W+ SP+ +  +  +C GDG AD
Sbjct:   73 VLSDVCAFGVTSIVAFSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVFMLCWPLFSSGIQGALFASLVPGLNIVRMLLLGLGVYHDEGTIKSMSRHGDRRELLKGPLYYVLSITSACIYYWKSSPIAIAVICNLCAGDGMAD 214          
The following BLAST results are available for this feature:
BLAST of CK936854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PHYK1_SOYBN7.358e-5970.30Probable phytol kinase 1, chloroplastic OS=Glycine... [more]
PHYK1_ARATH2.215e-5570.13Phytol kinase 1, chloroplastic OS=Arabidopsis thal... [more]
PHYK1_ORYSJ7.375e-5163.09Probable phytol kinase 1, chloroplastic OS=Oryza s... [more]
PHYK_MAIZE2.146e-5063.76Probable phytol kinase, chloroplastic OS=Zea mays ... [more]
PHYK_WHEAT8.154e-5064.08Probable phytol kinase, chloroplastic OS=Triticum ... [more]
PHYK2_SOYBN1.261e-4258.39Probable phytol kinase 2, chloroplastic OS=Glycine... [more]
PHYK2_ORYSJ2.231e-3135.35Probable phytol kinase 2, chloroplastic OS=Oryza s... [more]
PHYK3_SOYBN4.970e-3144.37Probable phytol kinase 3, chloroplastic OS=Glycine... [more]
PHYK2_ARATH1.954e-2739.44Probable phytol kinase 2, chloroplastic OS=Arabido... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_C07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936854 ID=CK936854; Name=CK936854; organism=Citrus sinensis; type=EST; length=659bp
GGGGGAATCTAACNNNATATGATACATAAATTAATTAAATAAAGATGAGC
CTCAGCCTCAGCCTCTTATCCAGGCACCCAATCTCCGGCCGCCACGTGGG
CAGCGCCGCCACCCACGTCTTCCCCATAAGCCCACGTGTTTTCCGTGGGT
CGATGTCCGTTTGGCCCGCCCGTGTATCATTGGATCCGCATACGCTGAGG
TTTCGTGTCAGCGCCGCCGCCAGAGTTGGCCACCTGTTGCATGATGCTGG
AGCTACTGCCGCTGTACTCGTCGGTGCTTACGGTCTTGTTTTGAGTTTTG
ATAATCTCTCTCAGAGAAAGCTTATTCAGCAGAGTTTAAGCAGAAAACTT
GTACATATATTGTCGGGATTGTTATTCATGGTTTCATGGCCAATTTTCAG
CACCTCAACAGAGGCTCGCTACTTTGCTGCTTTGGTTCCTCTTGTGAATT
GCTTGAGACTTGTCATTAACGGCCTCTCATTGGTAAAGGATGATGGGCTC
ATAAAATCTGTTACTCGTGAAGGAAACCCAAAGGAGTTGCTTAGAGGGCC
ATTATATTATGTCCTCATGTTAATTCTTTCTGCTCTTGTCTTTTGGCGTG
ATTCTCCAGTTGGGGTGATCTCTCTCTCGATGATGTGTGGAGGAGATGGT
ATNGCTGAC
back to top