CK936784

Overview
NameCK936784
Unique NameCK936784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.469e-32
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   85 MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 6.469e-32
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   85 MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.441e-31
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   85 MKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.458e-31
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   85 MKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.152e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct:   85 MKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CK936784 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.886e-23
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 VKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
            +KKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:   89 MKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158
The following BLAST results are available for this feature:
BLAST of CK936784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
R23A2_ARATH6.469e-3295.7160S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
R23A1_ARATH6.469e-3295.7160S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_TOBAC1.441e-3194.2960S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_DAUCA2.458e-3194.2960S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
RL23A_FRIAG7.152e-3192.8660S ribosomal protein L23A OS=Fritillaria agrestis... [more]
RL23A_RAT5.304e-2680.0060S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE5.304e-2680.0060S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN5.304e-2680.0060S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN5.304e-2680.0060S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR1.886e-2371.4360S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_A05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936784 ID=CK936784; Name=CK936784; organism=Citrus sinensis; type=EST; length=438bp
GGGTGAAGAAGATCGAGGACAATAATACCTTGGTTTTCATTGTTGACATC
CGTGCTGATAAGAGGAAGATCAAGGATGCCGTCAAGAAAATGTACGAAAT
TCAGACCAAGAAAGTCAACACTTTGATCAGACCTGATGGAACTAAGAAGG
CATATGTTAGGCTGACTCCGGATTATGATGCATTGGATGTGGCCAACAAG
ATTGGAATTATCTAAGGAGTGAGTTCGTGTGTATTGTCAACAGTTTTGTT
AGGACTCCAATTTCGTTTTGGTTATTTTCAAATATGTACTCAGATCTATC
TTTTATATTGAGTTTTTGCATTGGATGCCTATTAAGATCATCGTTAAACT
TGTTCTGCCATTAACTGCATCTCATTAAATCAAAATCCTCGCACTTATTG
TTGGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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