CK936780

Overview
NameCK936780
Unique NameCK936780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1248 contig Csv1_Contig1248:37..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.807e-92
Identity = 183/279 (65.59%), Postives = 209/279 (74.91%), Query Frame = 1
Query:   28 AYTDLTNSGSSIPLNSPTSFGFSK------RRIIFAKELKLNCSIDREKEIDVSTSALVDDVAXXXXXXXXXXXXPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            ++ DL++ G  I  NSPTS   SK      ++I      KLNC +  EK +D  T + V++                VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENG YDYTRSGNPTRDALES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA
Sbjct:   14 SFADLSDRGL-ISKNSPTSVSISKVPTWEKKQISNRNSFKLNCVM--EKSVDGQTHSTVNNTTDSLNTMNIKEEA-SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 288          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.034e-43
Identity = 85/187 (45.45%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK ++ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+A
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVA 206          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.034e-43
Identity = 85/187 (45.45%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    TK ++ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+A
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVA 206          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.764e-43
Identity = 85/187 (45.45%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +L+++ +A    TK V+ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+A
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAVYFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVA 206          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.752e-43
Identity = 84/186 (45.16%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+             F+SGMAA+ AV  L  +G+ +V  DD+YGGT R++++V  + G+    V+T   +EV  AI P TK +++E+PTNP  +I D+  +A++A   G LL+VDN+  +P   +PL LGADIV+HSATK++ GHSDV+
Sbjct:   19 GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAITAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVV 204          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CBL_SCHPO (Cystathionine beta-lyase OS=Schizosaccharomyces pombe GN=str3 PE=2 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 1.264e-41
Identity = 93/203 (45.81%), Postives = 124/203 (61.08%), Query Frame = 1
Query:  241 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+               ++GM+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T DL    +A+ P T LV +ESPTNPR  ICDIR I ++  + A  ALL++DN+++SPVL  PL+ G DIV  SATK+++GH D+M
Sbjct:    9 VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLMKAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSDLAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLM 211          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.651e-41
Identity = 83/187 (44.39%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            GA+S P+   +TF Q S  E GAYDY+RSG PTR ALE              F+SGMAA++    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  D +EVA +I P TK++++E+P+NP   I DI+ + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++GHSDV++
Sbjct:   24 GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLS 210          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.156e-41
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPS-ATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 837
            GA+  P+  + TF QPS    +  YDY+RSGNPTR A E              F SG+A L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    T+LVW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I GHSD
Sbjct:   25 GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLATLTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSD 209          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 82/187 (43.85%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  286 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 846
            GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE              F SG+A + AV  LL +G+ ++ GDD+YGGT RL ++V  K G+    ++T D+ ++  AI P TK +++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV HS TK++ GHSDV+A
Sbjct:   19 GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVA 205          
BLAST of CK936780 vs. ExPASy Swiss-Prot
Match: CGL_HUMAN (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.825e-40
Identity = 82/186 (44.09%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  289 ALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 843
            A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P TKLVW+E+PTNP Q++ DI   A + H HG  +L+VDN+ MSP   RPL LGADI M+SATK++ GHSDV+
Sbjct:   36 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVV 221          
The following BLAST results are available for this feature:
BLAST of CK936780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
METC_ARATH7.807e-9265.59Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
METC_LACLM1.034e-4345.45Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.034e-4345.45Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLC1.764e-4345.45Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MCCB_BACSU8.752e-4345.16Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
CBL_SCHPO1.264e-4145.81Cystathionine beta-lyase OS=Schizosaccharomyces po... [more]
METC_BACSU1.651e-4144.39Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
CGL_DICDI2.156e-4145.41Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METB_HELPY4.803e-4143.85Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_HUMAN1.825e-4044.09Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004518_A01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936780 ID=CK936780; Name=CK936780; organism=Citrus sinensis; type=EST; length=846bp
GGGGATCTCAAGCCTTTCGTCTCCGATGCCTACACTGATCTCACCAACAG
TGGTTCTTCAATACCTTTAAATTCCCCAACAAGCTTTGGGTTTAGTAAAA
GGCGGATAATATTTGCGAAGGAATTAAAACTGAATTGCTCGATAGACAGG
GAAAAGGAAATTGATGTCAGCACTTCAGCTCTTGTGGATGATGTAGCTGA
GTGTTTGGAAGAAGAAATGAGCGTGGAGGAGGAGCCTGGTGTTTCTACAT
TATTGATGAATTTTTCTAATGAGTTTGATCCTTATGGTGCGTTGAGCACT
CCGCTTTATCAGACTGCGACATTTAAGCAACCTTCTGCGACAGAGAATGG
CGCCTATGATTATACCAGAAGTGGAAATCCTACACGAGATGCCTTAGAAA
GCCTCCTTGCAAAGCTTGATAAGGCCGACCAAGCGCTTTGCTTCACCAGC
GGAATGGCTGCTTTGGCTGCTGTTACTCATCTTCTTGGAACTGGTGAAGA
AATTGTTGCTGGAGATGACCTGTATGGTGGTACTGATCGTTTGTTATCAC
GAGTAACTCCTAAAACTGGGGTTGTAGTGAAGCGTGTGAATACATGCGAT
CTAGATGAGGTTGCCTCTGCTATTGGTCCTTGGACAAAGCTTGTCTGGGT
GGAAAGTCCAACCAACCCTCGACAACAAATTTGTGACATTCGTAAAATTG
CCGAAATGGCTCATGCACATGGTGCTCTTCTGCTAGTGGATAACAGCATT
ATGTCCCCTGTATTATCTCGACCTCTGGAACTCGGAGCAGACATTGTGAT
GCACTCAGCTACTAAATTTATAGCTGGACATAGTGATGTCATGGCA
back to top