CK936775

Overview
NameCK936775
Unique NameCK936775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936775_ssr394 microsatellite CK936775_ssr394:394..405. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:71..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            P T A +CGQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            P+  A TCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 2
Query:   56 VTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            V +A TCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 2
Query:   71 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            TCGQV++SLAPCI +LR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    2 TCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.757e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   71 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            TCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    2 TCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 2
Query:   56 VTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            V +A TC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 2
Query:   71 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            TCGQV++SLAPCI ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    2 TCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.537e-28
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            P+  A TCGQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.259e-27
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 2
Query:   53 PVTNAXTCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            P   A TCGQVT++LAPC+ +LR  G  P   CC GV++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CK936775 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.147e-27
Identity = 53/91 (58.24%), Postives = 72/91 (79.12%), Query Frame = 2
Query:   71 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 343
            TCGQV+++LAPCI +++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    2 TCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CK936775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_HELAN1.100e-3164.95Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.437e-3159.79Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO2.451e-3162.50Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI7.132e-3167.03Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE1.757e-2961.54Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO8.718e-2956.25Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR8.718e-2961.54Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV2.537e-2854.64Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_TOBAC1.259e-2761.86Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PRUDO2.147e-2758.24Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936775 ID=CK936775; Name=CK936775; organism=Citrus sinensis; type=EST; length=477bp
GGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTG
CCCCGGTGACTAATGCNNNAACATGCGGGCAGGTGACAGCCTCCTTGGCT
CCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATG
CTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACC
GCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGC
ATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAAT
TCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTT
GAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAAT
AAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTG
TATGAGTTTCACTCTCATGTCATGTTT
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