CK936770

Overview
NameCK936770
Unique NameCK936770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7370 contig Csv1_Contig7370:91..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.459e-68
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 3
Query:   87 QREFDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDALEQ 317
            QREFDYF  +LQWPGT C+ TRHCC  N CCRGS+APT+FTIHGLWPDYNDG+WPSCC +S F EKEISTL+D LE+
Sbjct:   29 QREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEK 105          

HSP 2 Score: 135.961 bits (341), Expect = 1.459e-68
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  319 WPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 567
            WPS  CGS S+C  G+G FW HEWEKHGTCS PV  DEY+YF TTLNLY K+NVT VL +AGY+ SN+EKYPLGGIV+AIQNA
Sbjct:  107 WPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNA 189          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.469e-29
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 3
Query:   24 ASFCQLKAIGIREAVDDAVGEQREFDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSK-FDEKEISTLLDALEQ 317
            AS C +  + I  +V  A     +FD+F F  QWPG+ C   + CC  N          +F IHGLWP+Y DGT+PS C  SK FD   IS LL ++++
Sbjct:    6 ASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPN----SGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKK 100          

HSP 2 Score: 65.4698 bits (158), Expect = 5.469e-29
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  316 SWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 567
            SWP+  C S S    GE  FW HEWEKHGTCS  V+ D++ YF T LNL  K N+   L +AG  P   + Y L  I  +I+ +
Sbjct:  101 SWPTLACPSGS----GEA-FWEHEWEKHGTCSESVI-DQHEYFQTALNLKQKTNLLGALTKAGINPDG-KSYSLESIRDSIKES 177          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.995e-26
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 3
Query:   90 REFDYFNFALQWPGTQCKNTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWP-SCCKKSKFDEKEISTLLDALEQ 317
            ++FD+F F  QWP + C   R CC P+ G         +F+IHGLWP+Y DG WP +C ++S  DE E S L+  +E+
Sbjct:   26 QDFDFFYFVQQWPASYCDTRRSCCYPTTG-----KPDEDFSIHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEK 98          

HSP 2 Score: 62.7734 bits (151), Expect = 3.995e-26
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  316 SWPSYRCGSTSTCYSGEGL-FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQ 561
            +WPS  C S+      +GL FW+HEW KHGTCS     ++++YF T L+   K N+ + LN AG  P N + Y +  I  AI+
Sbjct:   99 NWPSLACPSS------DGLKFWSHEWLKHGTCS---ALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIE 172          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.259e-25
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 3
Query:   90 REFDYFNFALQWPGTQCKNTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWPS-CCKKSKFDEKEISTLLDALEQ 317
            ++FD+F F  QWPG+ C   + CC P+ G         +F IHGLWP+ NDGT+PS C   S +D+ +IS L+ +++Q
Sbjct:   27 KDFDFFYFVQQWPGSYCDTKQSCCYPTTG-----KPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQ 99          

HSP 2 Score: 60.077 bits (144), Expect = 7.259e-25
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  316 SWPSYRCGSTSTCYSGEG-LFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 567
            +WP      T  C SG G  FW+HEWEKHGTC+  V+ ++++YF   L+L  + ++  +L  A   P   E Y L  I +AI++A
Sbjct:  100 NWP------TLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDG-ESYDLVNIRNAIKSA 177          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.384e-22
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 3
Query:   90 REFDYFNFALQWPGTQCKNTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWP-SCCKKSKFDEKEISTLLDALEQ 317
            ++FD+F F LQWPG  C +   CC P  G         +F IHGLWP+Y  G WP +C   S+FD+  +S L+  L++
Sbjct:   20 QDFDFFYFVLQWPGAYCDSRHSCCYPQTG-----KPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQR 92          

HSP 2 Score: 54.299 bits (129), Expect = 2.384e-22
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1
Query:  307 LWSSWPSYRCGSTSTCYSGEGL-FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSN 519
            L   WP      T +C S +G+ FW HEWEKHGTC+   + D++ YF   L L  K N+   L  AG  P +
Sbjct:   90 LQREWP------TLSCPSNDGMKFWTHEWEKHGTCAESEL-DQHDYFEAGLKLKQKANLLHALTNAGIKPDD 154          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 1.214e-16
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query:  319 WPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFP-VVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAI 558
            WPS    +T         FW HE+ KHGTCS    + D + YF+T + LY ++N+T  L      PS++  Y    I +AI
Sbjct:   99 WPSLTGPNTD--------FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAI 171          

HSP 2 Score: 50.0618 bits (118), Expect = 1.214e-16
Identity = 25/73 (34.25%), Postives = 36/73 (49.32%), Query Frame = 3
Query:   93 EFDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDAL 311
            +FD++ F  QW  + C +          C  +     FTIHGLWP+ +DG++PS C    F+   I  L D L
Sbjct:   31 DFDFYLFVQQWIYSYCDSQT--------CIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQL 95          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNPB_PHYPO (Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.060e-16
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 1
Query:  319 WPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNT 522
            WPS+   + S        FW+HEW KHGTCS      E+ +F+T L+LY +Y+V   L+  G  P ++
Sbjct:   61 WPSFTGDNAS--------FWSHEWSKHGTCSGYA---EHDFFATVLSLYDQYDVKSALDNGGIEPGSS 117          

HSP 2 Score: 51.2174 bits (121), Expect = 2.060e-16
Identity = 25/73 (34.25%), Postives = 35/73 (47.95%), Query Frame = 3
Query:   96 FDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDALE 314
            FD+F F  +W                    S +   FTIHGLWP+ +DG++PS C   KF    IS L+D ++
Sbjct:    5 FDFFIFVTEW------------------NASISTEYFTIHGLWPENSDGSYPSGCSSGKFSTSTISDLIDTMQ 59          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNS1_PYRPY (Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.851e-16
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  373 FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYF--KYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQ 561
            FW  EW KHGTC +P ++D+  Y  T + +Y   K NV+ +L++A   P+ T + PL  I +AI+
Sbjct:  108 FWEKEWIKHGTCGYPTIKDDMHYLQTVIRMYITQKQNVSAILSKAAIQPNGTNR-PLVDIENAIR 171          

HSP 2 Score: 45.4394 bits (106), Expect = 5.851e-16
Identity = 24/75 (32.00%), Postives = 35/75 (46.67%), Query Frame = 3
Query:   96 FDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTE--FTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDALE 314
            +DYF F  Q+    C +    C         N PT+  FT+HGLWP   +G  P  CK +  + ++I  +   LE
Sbjct:   28 YDYFQFTQQYQPAVCNSNPTPC---------NDPTDKLFTVHGLWPSNRNGPDPEKCKTTALNSQKIGNMTAQLE 93          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.769e-15
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  373 FWAHEWEKHGTC--SFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQ 561
            FW HEW KHGTC  S P   +E  YF   L L+ KYN++R+L   G LPS T  Y +    +A++
Sbjct:   85 FWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVK 149          

HSP 2 Score: 35.4242 bits (80), Expect = 4.769e-15
Identity = 22/78 (28.21%), Postives = 36/78 (46.15%), Query Frame = 3
Query:   90 REFDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTEFTIHGLWPDYN-DGTWPSCCKKS-KFDEKEISTLLDALEQ 317
            ++++YF FA QWP   C   + C          ++   + IHGLWP  + +   P  C  S  FD   +  L+  L++
Sbjct:    1 KDWNYFTFAQQWPIAVCAEHKSCFI-------PDSVVGWGIHGLWPSSDTESKGPENCNGSWPFDINNVMPLVPELKK 71          
BLAST of CK936770 vs. ExPASy Swiss-Prot
Match: RNS4_PYRPY (Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 8.042e-15
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 1
Query:  373 FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYF--KYNVTRVLNEAGYLPSNTEK 528
            FW  EW KHGTC +P ++D+  Y  T + +Y   K NV+ +L++A   P+   +
Sbjct:  108 FWEREWLKHGTCGYPTIKDDMHYLKTVIKMYITQKQNVSAILSKATIQPNGNNR 161          

HSP 2 Score: 46.595 bits (109), Expect = 8.042e-15
Identity = 25/75 (33.33%), Postives = 35/75 (46.67%), Query Frame = 3
Query:   96 FDYFNFALQWPGTQCKNTRHCCPSNGCCRGSNAPTE--FTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDALE 314
            FDYF F  Q+    C +    C         N PT+  FT+HGLWP   +G  P  CK +  + ++I  +   LE
Sbjct:   28 FDYFQFTQQYQPAVCNSNPTPC---------NDPTDKLFTVHGLWPSNRNGPDPEKCKTTTMNSQKIGNMTAQLE 93          
The following BLAST results are available for this feature:
BLAST of CK936770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RNS2_ARATH1.459e-6875.32Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNS1_ARATH5.469e-2940.40Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNLX_SOLLC3.995e-2642.31Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNLE_SOLLC7.259e-2542.31Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNS3_ARATH2.384e-2241.03Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=... [more]
RNDI_DICDI1.214e-1635.80Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
RNPB_PHYPO2.060e-1638.24Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV... [more]
RNS1_PYRPY5.851e-1640.00Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNOY_CRAGI4.769e-1544.62Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
RNS4_PYRPY8.042e-1537.04Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004518_B12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936770 ID=CK936770; Name=CK936770; organism=Citrus sinensis; type=EST; length=567bp
CCCCCCCCCAATTTCGAAAAACGGCGTCGTTTTGCCAGCTCAAAGCGATC
GGAATCAGAGAGGCAGTAGACGATGCCGTAGGTGAGCAGAGAGAGTTCGA
TTACTTCAACTTTGCTCTCCAGTGGCCTGGCACTCAGTGTAAAAACACTC
GCCATTGCTGTCCCTCCAACGGTTGTTGCCGAGGGTCGAATGCTCCAACT
GAATTTACAATCCATGGACTGTGGCCTGACTATAATGATGGAACCTGGCC
TTCTTGCTGCAAGAAATCTAAGTTTGATGAGAAGGAGATATCAACATTGC
TTGATGCTCTGGAGCAGTTGGCCATCATACAGATGTGGTTCAACATCAAC
TTGCTATAGTGGGGAAGGGCTATTTTGGGCTCATGAGTGGGAGAAGCACG
GAACTTGTTCTTTTCCAGTAGTTAGAGATGAATACAGTTACTTTTCAACT
ACCCTCAACTTGTACTTTAAATATAATGTCACGAGAGTACTGAATGAAGC
TGGATATCTTCCTTCTAATACTGAAAAGTATCCTCTAGGAGGCATTGTCT
CTGCCATTCAGAATGCT
back to top