CK936717

Overview
NameCK936717
Unique NameCK936717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:215..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936717 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:   98 PAATRAKRGGLIVVAKAASSKAENVSMEFKNKDDSSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 370
            P+AT  +R  L VV  + S    ++ +    K+ SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   18 PSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of CK936717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH8.423e-1143.96Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004518_H11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936717 ID=CK936717; Name=CK936717; organism=Citrus sinensis; type=EST; length=536bp
GGGGAACAGAGAAATCACTTGCAACAAAGTCAGCAGCAAACATGGCTTCG
ATGACCATGGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAAACCCA
GCAGCAACAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGC
ATCATCAAAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGGATGACA
GCAGCAGCAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCTGCAGCA
GCTTGCTCCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACG
AGGGACCCCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCACAATGC
CTACTGCTAGAATCTGTCGCAAGTGAGAATGTTTTTTAATTTTCATGCTG
TTGATGTTAATTAGTGTCCAATTAATTGATATGAGATCAATGTTAAAAGC
TGTGAGCATCTGTATCTTGTAATTGGAGAATCCTGTTTATTTTATCTTGT
CTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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