CN186868

Overview
NameCN186868
Unique NameCN186868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186868_ssr218 microsatellite CN186868_ssr218:218..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:158..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.564e-79
Identity = 156/210 (74.29%), Postives = 157/210 (74.76%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDVIHPLKVSLEDLYNGTSKKLSLSRNVI                    QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC QCKGEKV+QEKKV
Sbjct:   11 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCSQCKGEKVVQEKKV 219          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.709e-76
Identity = 145/210 (69.05%), Postives = 154/210 (73.33%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            T+YYEILGV K+AS +DLKKAY+KAAIKNHPDKGGDPEKFKELA AYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLEDL+ GT+KKLSLSRNVI                    QG+GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV+QEKKV
Sbjct:   12 TRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLEDLFTGTTKKLSLSRNVICSKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKV 221          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 8.880e-75
Identity = 141/210 (67.14%), Postives = 152/210 (72.38%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TKYYE+LGVSKNA+ +DLKKAYRKAAIKNHPDKGGDPEKFKE+ QAYEVL+DPEKREIYDQYGE+ LKE        HDPFDI                        EDV+HPLKVSLEDLYNGTSKKLSLSRNV+                    QGSGMKVSIR LGP MIQQMQHPCNECKGTGE I+DKDRCPQCKGEKV+Q+KKV
Sbjct:   12 TKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPEKFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKDRCPQCKGEKVVQQKKV 221          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.282e-73
Identity = 140/209 (66.99%), Postives = 149/209 (71.29%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TK+YEILGV K+AS +DLKKAY+KAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                       EDV+HPLKVSLED+Y GT KKLSLSRN +                    QGSGMKVSIR LGP MIQQMQH CNECKGTGETIND+DRCPQCKG+KVI EKKV
Sbjct:   13 TKFYEILGVPKSASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETINDRDRCPQCKGDKVIPEKKV 221          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.016e-70
Identity = 138/200 (69.00%), Postives = 143/200 (71.50%), Query Frame = 2
Query:   35 KNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            KNAS DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAY+VLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLE+LYNGTSKKLSLSRNVI                    QGSGMKVSIR LGP MIQQMQHPCN+CKGTGE INDKDRCP CKGEKV+QEKKV
Sbjct:    1 KNASPDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEKKV 200          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 6.586e-70
Identity = 133/210 (63.33%), Postives = 147/210 (70.00%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TK+YEILGV K A+ +DLKKAY+KAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLED+Y GT+KKLSLSR  +                    QGSGMK+SIR  GP M+QQ+QH CN+CKGTGETIND+DRCPQCKGEKV+ EKKV
Sbjct:   13 TKFYEILGVPKTAAPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGSGGHPFGSHSRGRRQRRGEDVVHPLKVSLEDVYLGTTKKLSLSRKALCSKCNGKGSKSGASMKCGGCQGSGMKISIRQFGPGMMQQVQHACNDCKGTGETINDRDRCPQCKGEKVVSEKKV 222          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.632e-46
Identity = 97/210 (46.19%), Postives = 126/210 (60.00%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            T+YY+ILGV  +AS +++KKAYRK A+K HPDK  D  EKFK ++QAYEVLSDP+KR++YDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM++ I+ +GP M+QQ+Q  C ECKG GE IN KDRC  C G KVI+EKK+
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRG------KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKKI 208          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 95/210 (45.24%), Postives = 126/210 (60.00%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+
Sbjct:    7 TKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKI 216          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 95/210 (45.24%), Postives = 126/210 (60.00%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+
Sbjct:    7 TKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKI 216          
BLAST of CN186868 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 95/210 (45.24%), Postives = 126/210 (60.00%), Query Frame = 2
Query:    5 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 631
            TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+
Sbjct:    7 TKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKI 216          
The following BLAST results are available for this feature:
BLAST of CN186868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJH_CUCSA1.564e-7974.29DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH_ATRNU4.709e-7669.05DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNJH2_ALLPO8.880e-7567.14DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNAJ3_ARATH1.282e-7366.99Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNJH1_ALLPO1.016e-7069.00DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNAJ2_ARATH6.586e-7063.33Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJA4_HUMAN6.632e-4646.19DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA2_RAT1.477e-4545.24DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE1.477e-4545.24DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_HUMAN1.477e-4545.24DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186868 ID=CN186868; Name=CN186868; organism=Citrus sinensis; type=EST; length=633bp
CTTTACAAAGTACTATGAGATTCTCGGAGTCTCGAAAAACGCTTCGCAAG
ATGATCTGAAGAAGGCTTATAGGAAAGCCGCCATCAAAAACCATCCTGAC
AAGGGCGGTGATCCTGAGAAGTTTAAAGAGTTGGCACAAGCGTATGAGGT
TCTGAGTGACCCAGAGAAGCGTGAAATATATGATCAATACGGCGAGGATG
CGCTTAAAGAGGGAATGGGTGGTGGTGGTGGTGCCCATGACCCATTCGAC
ATATTCCAATCCTTCTTCGGTGGCAGCCCATTTGGTGGTGGGAGCAGCAG
AGGAAGAAGGCAAAGGAGGGGAGAGGACGTAATCCATCCCCTCAAGGTTT
CGTTGGAGGATCTGTACAATGGGACATCTAAGAAGCTCTCGCTCTCCCGC
AATGTAATCTGCACCAAGTGCAAAGGGAAGGGGTCTAAGTCAGGTGCATC
AATGAAATGTTCTGGCTGCCAGGGATCTGGAATGAAAGTTTCAATAAGAC
ACCTTGGCCCCTCTATGATTCAACAAATGCAGCATCCTTGCAATGAGTGC
AAGGGTACTGGAGAAACAATCAATGACAAGGATCGCTGCCCACAATGTAA
GGGTGAGAAGGTCATTCAGGAGAAAAAAGTCTT
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