CK936646

Overview
NameCK936646
Unique NameCK936646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1949 contig Csv1_Contig1949:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936646 vs. ExPASy Swiss-Prot
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 2 
Query:   92 MAAQNKISHQVGEFQNDVFRFDIH-GVKSDIVGSHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESE 433
            MA+   +  ++G   +DV RF ++  VK D+   HPL+       +   + KR      YG+AF ++ D D QILS+FQRP GA+PSSMLG EA+TGSL+DFGFE YLN    SE
Sbjct:    1 MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114
[Close]
BLAST of CK936646 vs. ExPASy Swiss-Prot
Match: POMP_DICDI (Proteasome maturation protein homolog OS=Dictyostelium discoideum GN=pomp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  188 SHPLETLCQSAKQREEEMKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLS 487
            SHP+E++     + E ++K   + N +GT   M  + ++QI S+F+R PT  + SSM+GLE + G  EDF F  YL DP  SE+  P  LH  ME R+G++
Sbjct:   25 SHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQSSMVGLETILGLDEDFDFGDYLCDPATSEAPLP-QLHTSMEHRLGMT 122
The following BLAST results are available for this feature:
BLAST of CK936646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCB12_ORYSJ4.470e-1946.09Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
POMP_DICDI5.851e-1140.59Proteasome maturation protein homolog OS=Dictyoste... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004520_A03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936646 ID=CK936646; Name=CK936646; organism=Citrus sinensis; type=EST; length=775bp
GGGGGTTCATCTTTTCCGTTCTTCATTCGTAACTTGTTCAAAAAGTTTCA
GCAAGAGCATTCACTCACACGGAAGAATCGAAGTGCAAAATATGGCGGCA
CAGAACAAGATATCACACCAAGTCGGGGAGTTCCAAAACGACGTGTTTCG
ATTCGATATCCACGGCGTCAAGAGCGACATCGTTGGATCTCACCCTCTAG
AAACCCTATGCCAATCTGCTAAGCAGAGGGAGGAGGAGATGAAGAGAAGA
ATTCTTGTGAACACTTATGGAACGGCTTTCCCAATGAAGATGGATTTTGA
TAGGCAAATTCTTTCTCGATTTCAGAGGCCAACAGGTGCAATTCCATCTT
CAATGCTTGGTTTGGAGGCTGTGACAGGAAGCTTGGAAGATTTTGGATTC
GAGCACTATCTGAATGACCCTCGTGAATCTGAATCTTTCCGACCAGCAGA
CCTGCATCATGGAATGGAAGTGCGCATTGGCCTCTCCAAAGGCCCGGCTC
ACCCAAGCTTTATATGATTTACGCAGCTTTATTCAATGATTCAGTGAAGG
ATCTTAAGATGTGCTTGTACCAGTTTTCAATGAAGACATTTTAATGTGTC
ATTAGAGACTGAATTTATTTACATCACCTGAAAATCGAACAGCTAGCTTT
TAGTACATGTGATCCTTTTGTTCTCCCCTGTTATCATATTTGACTATCAT
GGATGCTTGAAAGTTAAACCAGCTGTTCCTTTTTTGCTTAAAAAAAAAAA
AGAAAAAAAAAAAAAAAAAAAAAAA
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