CK936627

Overview
NameCK936627
Unique NameCK936627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936627_ssr94 microsatellite CK936627_ssr94:94..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:164..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.164e-52
Identity = 114/177 (64.41%), Postives = 133/177 (75.14%), Query Frame = 3
Query:    3 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSGGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 509
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLSGGGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.247e-37
Identity = 85/175 (48.57%), Postives = 115/175 (65.71%), Query Frame = 3
Query:    3 RSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSGGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 509
            R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+  GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   23 RFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  123 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--GGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 509
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.747e-32
Identity = 70/121 (57.85%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  150 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQL-SGGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 509
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL SG G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.281e-32
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  150 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQL-SGGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 497
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL SG G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CK936627 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 60/128 (46.88%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  126 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSGGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 497
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL G        T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQL-GDQPTLIALTFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CK936627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.164e-5264.41Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL5.247e-3748.57Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU6.003e-3357.25High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.747e-3257.85Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.281e-3258.97Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA7.124e-1846.88Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004520_B08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936627 ID=CK936627; Name=CK936627; organism=Citrus sinensis; type=EST; length=608bp
GGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTG
CGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCA
GCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGC
CACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTC
AGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTT
CGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCC
AGTTATCAGGCGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTC
ACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAA
ATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTTG
CTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGC
ACCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTGTATTTTTTT
TNNNNNATTAATGCATGAGATCCTACTGTAATTAAATCTCTATTTCTCAT
GCCATTCT
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