EY665823

Overview
NameEY665823
Unique NameEY665823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665823_ssr245 microsatellite EY665823_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665823 vs. ExPASy Swiss-Prot
Match: XPP1_DICDI (Xaa-Pro aminopeptidase 1 OS=Dictyostelium discoideum GN=xpnpep1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 3 
Query:   12 YLIVETDRVKLFVDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIA--IEKYLXXXXXXXXXXXMHTDTTGQCGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALTQFWVWLEKEI 446
            Y++VE ++V LFVD+SK+       L + G+ + PY+S+   +++   QG ++W+DP S + A+ N   I+  +EK                               +PI  SKA+KN  E++GM N+H+RDA AL QF  W+E+EI
Sbjct:  244 YVVVEHEKVTLFVDESKLNDKTKSQLPS-GIAISPYSSVFEYLRNSDKQGKKIWIDPRS-SVALYNCVSISNLLEKI------------------------------NPILLSKAIKNETEIQGMKNAHIRDAVALIQFLAWMEEEI 358
The following BLAST results are available for this feature:
BLAST of EY665823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XPP1_DICDI5.733e-1633.33Xaa-Pro aminopeptidase 1 OS=Dictyostelium discoide... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665823 ID=EY665823; Name=EY665823; organism=Citrus sinensis; type=EST; length=885bp
CACGCGTCCGGTACTTAATCGTGGAAACCGATAGAGTAAAATTATTTGTG
GATGATTCTAAAGTTACTCCAGATGTGATGGATCACTTGAAGAATGCTGG
TGTGGAGTTGAGGCCATACAATTCCATCCTTTCTGAAATAAAAAGTTTGG
CAGCTCAAGGAGCTCAACTTTGGCTGGACCCTTCCTCTGTTAATGCTGCT
ATTATGAACACCTATGAGATTGCCATTGAGAAGTATCTCACAAGTAATAA
TAATAAAAAAAGTAAGACCAAGATGCATACTGACACCACTGGTCAGTGTG
GAGGACCTGCTGGGGTTTTCAGGACATCCCCTATTGCCTTCTCGAAGGCA
GTGAAAAATTCTGCTGAGCTAGAAGGAATGCTAAACTCTCATTTAAGGGA
TGCTGCTGCTTTAACACAATTTTGGGTCTGGCTGGAAAAAGAAATTCATA
ATGGTGCAAAAACTAACAGAAGTAGATGTTGGAAATAAACCTTCTTGAAT
TCCCGGGCAAAGCAGTCTGGGTTTTCTAAATACCAGCTTTTGAAACCTAA
AGCGGCTCCGGTGGAAATGGGGCCCTCCATTTCCTTACAACCCCAAAACC
CTGGGGAAATGGAAGGGTGTAACATTCCAAAAAAAACTATTTCTATTAAA
ACAGGGGGAGCTCAATAAGCTCGATGGAACCCATTGACCTAACCAAGGAC
TGGAACCACTTTCGGGGAAACTAACGGTCTAAAAAAAAAGGCAAGGCTTC
CCCCCGAATTCCAACAGGGGCCAATTAACACTTTTTGGCCAAAACTAATT
CTTTTCCACCACACGCCACTGCCTAGGCTTATCGGGCGAGAACACCTATG
ACGCTCCTCAAATCGAACAAAAAAAAAACAACATA
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