CN186836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27 Identity = 83/264 (31.44%), Postives = 132/264 (50.00%), Query Frame = 1 Query: 1 AGEGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAXXXXXXXXXXXXXXXXHQLTFSRESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIREKQ 792 +G G S S+ PSP+P + + R P S R + D +P+P + +L+ R + E+G++ +T +++ +E + + +DR WY +EG +D + D +++E L K+ ++ S + QI DN +WE ++L SG V E+ +F+++ KV L+VH+ PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS VR RE++ Sbjct: 220 SGYGSSRRSQWESPSPTPSYRDSERSHR---PSSRDRDRSVRSRYSDD---TPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGEEGISFDTEEERQQ-WE-------DDQRQADRDWYMMDEG---YDEFHNPLAYSSDDYVRRREQHLHKQKQKRI--------SAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQK 458
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.337e-26 Identity = 82/264 (31.06%), Postives = 132/264 (50.00%), Query Frame = 1 Query: 1 AGEGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAXXXXXXXXXXXXXXXXHQLTFSRESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIREKQ 792 +G G S S+ PSP+P + + RL ST + + +P P P + +L+ R + E+G++ +T +++ +E + + +DR WY +EG +D + + +++E L K+ ++ S + QI DN +WE ++L SG V E+ +F+++ KV L+VH+ PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS VR RE++ Sbjct: 220 SGYGSSRRSQWESPSPTPSYRDSERSHRL----STRDRDRSVRGKYSDDTPLPTP--SYKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQ-WE-------DDQRQADRDWYMMDEG---YDEFHNPLAYSSEDYVRRREQHLHKQKQKRI--------SAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQK 458
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21 Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 1 Query: 244 ESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVR-GTELSTEFDDE-EEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIRE 786 +S +S ++ A+ T D E + E + N DR WYD E FD + + F D +K+E + ++ + R+++ Q I +N WE +L RSG V ELS+ F+DE +E++V +LV + PPFLDGRIVFTKQA+P++P+ D T DMA+ + +GS VR RE Sbjct: 199 DSVRSVKEEKAEPTFHDDEERAQWEEEQK-----NLDREWYDNEGA---FDDEYNPFNKVSDEFVEKREKQWQEKTQKP---RLTVKQQA----IKRENELWENNRLHRSGVVAMADELSSIFEDETDENRVTILVQNIVPPFLDGRIVFTKQAQPIIPVVDTTCDMAVSAARGSVAVRKRRE 366
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12 Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 1 Query: 292 DKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAK------RLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIRE 786 D E+ E ES + ++A DR+ + S +LGD+ + E + + K +S+ S + + N WE+ +++ SG + L +++ EE +V LLV + +P FLDG +K+ + ++DP SD+AI +R GS LVR RE Sbjct: 261 DVEYPEEDPESKADRQRWEEEQAHLDRD----WYMNSESQNLLGDEVHNPFSDFETVEDRAHEAEFIEKQKKHLSIEASDRFKE----NSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRPHFLDGAEFSSKKVGDITSVRDPQSDLAINARLGSRLVRERRE 423 The following BLAST results are available for this feature:
BLAST of CN186836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186836 ID=CN186836; Name=CN186836; organism=Citrus sinensis; type=EST; length=798bpback to top |