CN186836

Overview
NameCN186836
Unique NameCN186836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 83/264 (31.44%), Postives = 132/264 (50.00%), Query Frame = 1
Query:    1 AGEGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAXXXXXXXXXXXXXXXXHQLTFSRESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIREKQ 792
            +G G S  S+   PSP+P +  +    R   P S  R     +   D    +P+P  +                 +L+  R   +  E+G++ +T  +++  +E       + +  +DR WY  +EG   +D   +      D   +++E  L K+  ++         S +  QI  DN +WE  ++L SG V   E+  +F+++   KV L+VH+  PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS  VR  RE++
Sbjct:  220 SGYGSSRRSQWESPSPTPSYRDSERSHR---PSSRDRDRSVRSRYSDD---TPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGEEGISFDTEEERQQ-WE-------DDQRQADRDWYMMDEG---YDEFHNPLAYSSDDYVRRREQHLHKQKQKRI--------SAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQK 458          
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.337e-26
Identity = 82/264 (31.06%), Postives = 132/264 (50.00%), Query Frame = 1
Query:    1 AGEGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAXXXXXXXXXXXXXXXXHQLTFSRESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIREKQ 792
            +G G S  S+   PSP+P +  +    RL    ST   +      +   +P P P  +                 +L+  R   +  E+G++ +T  +++  +E       + +  +DR WY  +EG   +D   +      +   +++E  L K+  ++         S +  QI  DN +WE  ++L SG V   E+  +F+++   KV L+VH+  PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS  VR  RE++
Sbjct:  220 SGYGSSRRSQWESPSPTPSYRDSERSHRL----STRDRDRSVRGKYSDDTPLPTP--SYKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQ-WE-------DDQRQADRDWYMMDEG---YDEFHNPLAYSSEDYVRRREQHLHKQKQKRI--------SAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQK 458          
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21
Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 1
Query:  244 ESSQSFEDGVADETNSDKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVR-GTELSTEFDDE-EEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIRE 786
            +S +S ++  A+ T  D E   +  E  +     N DR WYD E     FD + + F    D   +K+E +  ++  +    R+++ Q      I  +N  WE  +L RSG V    ELS+ F+DE +E++V +LV +  PPFLDGRIVFTKQA+P++P+ D T DMA+ + +GS  VR  RE
Sbjct:  199 DSVRSVKEEKAEPTFHDDEERAQWEEEQK-----NLDREWYDNEGA---FDDEYNPFNKVSDEFVEKREKQWQEKTQKP---RLTVKQQA----IKRENELWENNRLHRSGVVAMADELSSIFEDETDENRVTILVQNIVPPFLDGRIVFTKQAQPIIPVVDTTCDMAVSAARGSVAVRKRRE 366          
BLAST of CN186836 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  292 DKEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAK------RLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVRGIRE 786
            D E+  E  ES      +  ++A  DR+     +    S  +LGD+      + E  +        + K    +S+  S +  +    N  WE+ +++ SG  +   L +++   EE +V LLV + +P FLDG    +K+   +  ++DP SD+AI +R GS LVR  RE
Sbjct:  261 DVEYPEEDPESKADRQRWEEEQAHLDRD----WYMNSESQNLLGDEVHNPFSDFETVEDRAHEAEFIEKQKKHLSIEASDRFKE----NSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRPHFLDGAEFSSKKVGDITSVRDPQSDLAINARLGSRLVRERRE 423          
The following BLAST results are available for this feature:
BLAST of CN186836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRP16_BOVIN6.150e-2731.44Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_HUMAN2.337e-2631.06Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG1_CAEEL1.016e-2137.16Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO4.279e-1228.07Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003I05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186836 ID=CN186836; Name=CN186836; organism=Citrus sinensis; type=EST; length=798bp
GCAGGGGAAGGCTATTCTAATTCCAGTAAACGCTATCAGCCTTCGCCATC
CCCGATGTTCGTTGGGGCCTCACCTGATGCTCGATTAGTTTCTCCCTTGT
CAACACCTCGTTCCAATGGTTACGCTGCCTCTCCCTGGGACCACATCTCT
CCTTCGCCTGTTCCAATACGTGCGTCTGGATCCTCAGTTAAATCTTCAAG
TTCTGGGTATAGTAGGAGGTCCCATCAACTTACATTTTCCCGTGAAAGTT
CACAATCATTTGAGGACGGAGTAGCAGATGAGACCAATTCTGATAAAGAA
CACAATTATGAGATTACTGAAAGTATGCGTCTGGAAATGGAATACAACTC
TGACCGAGCATGGTATGACAGAGAAGAAGGGACCACAATGTTTGACACAG
ACAGCTCGTCTTTTATTCTTGGGGATGATGCTTCATACCAAAAGAAGGAG
GTGGAGTTGGCTAAAAGACTGGTTCGAAAGGATGGATCAAGGATGTCGCT
GGCTCAGAGCAAAAAGTTGTCTCAGATTACAGCTGATAATCACCAGTGGG
AAGAGAGACAACTTTTGAGATCGGGAGCTGTAAGAGGTACTGAGTTGTCG
ACTGAGTTTGATGATGAGGAAGAACACAAGGTTATTCTTCTTGTACACGA
TACAAAACCTCCTTTCCTGGATGGCAGAATTGTTTTCACCAAACAAGCAG
AGCCAGTAATGCCCATAAAGGATCCCACATCTGACATGGCTATAATTTCA
CGCAAAGGATCTGCTCTAGTTAGAGGAATTCGTGAGAAACAAACCCAG
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