CK936604

Overview
NameCK936604
Unique NameCK936604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936604_ssr49 microsatellite CK936604_ssr49:49..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_MOUSE (Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.528e-27
Identity = 66/137 (48.18%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  359 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            LSK +L+ LVV+T+  GFAL  G   D +    T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK++   NTWVGA+VGAIP
Sbjct:  159 LSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAIP 294          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_HUMAN (Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens GN=COX10 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 65/138 (47.10%), Postives = 84/138 (60.87%), Query Frame = 2
Query:  356 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            +LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIP
Sbjct:  159 QLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIP 295          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_PONAB (Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii GN=COX10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 65/137 (47.45%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  359 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIP
Sbjct:  160 LSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIP 295          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_EMENI (Protoheme IX farnesyltransferase, mitochondrial OS=Emericella nidulans GN=cox10 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  317 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTI---------------DLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            P + +R     ++ L+K RLS LV+ ++ + + +   S+I                     +  TGT + A SAN+LN +FE   DA+M RT  RPL  G ++ R AV +A +    G  LL +  N    GL+A+N+ LYAFVYTPLK++H +NTW+GAIVG IP
Sbjct:  142 PKTSLRRKLAAFFALTKPRLSFLVLLSTTSAYGIYPVSSILALDPTIAPLPTLSTSTLTFLYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVGLGLLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIP 307          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_ASPFU (Protoheme IX farnesyltransferase, mitochondrial OS=Aspergillus fumigatus GN=cox10 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 71/167 (42.51%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  317 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFA----------------LGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            P + +R     +  L+K RLS L+V T+ + +                 L + ST  L  L  T TGT + + SAN+LN L E   DA M RT  RPL  G +S R AV +A +   AG  LL    N  T  L+ASN+ LYAFVYTPLK+I  +NTWVGA+VG IP
Sbjct:  150 PATSLRRKLAAFLALTKPRLSFLIVLTTTSAYGMYPISSLLTLDPSMTPLPTLSTSTLTFLYLT-TGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAGLGLLYIGTNPTTTALSASNICLYAFVYTPLKRISVINTWVGAVVGGIP 315          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_GIBZE (Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae GN=COX10 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 69/159 (43.40%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  326 LIRHYGRCYWELSKARLSMLVVATSGTGFALG------SGSTIDLAGLC-----WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            L RH   C   L+K RL+MLVV T+   +AL       S ST +   L      +   GT   +ASAN+LN L+E S DAKM RT  RPL    IS R AV +A   G  GT  L +  N   +GL  +N+++YA +YTPLK +   NTW+GA+VG IP
Sbjct:  151 LRRHLSACL-SLAKPRLTMLVVLTAMATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGTTFCSASANALNMLYEPSTDAKMTRTRNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVNPTVSGLGFANIVIYAGMYTPLKAVTAFNTWIGAVVGGIP 308          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_SCHPO (Protoheme IX farnesyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=cox10 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  350 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            + EL K RL++LVV ++ + +AL     +    L W   GT + + SAN+ NQ  E   D +M RT  RP+P G I   +A  +A+  G+AGT+ +++  N     L   N++LY  +YTPLK+I  VNTWVG++VGAIP
Sbjct:   87 FLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIRPEYAWLFATLTGIAGTS-MSFLVNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIP 225          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_NEUCR (Protoheme IX farnesyltransferase, mitochondrial OS=Neurospora crassa GN=cox-10 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 65/151 (43.05%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  359 LSKARLSMLVVATSGTGFALG------SGSTIDLA--------GLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            LSK RL++LVV ++   +AL       + S +D +         L +  TGT + +ASAN+LN L+E   D+KM RT  RPL    ++ + AV +A   G+AGT  L +  N   + L A+N+ LYA  YTPLK+I  VNTWVGAIVG IP
Sbjct:  187 LSKPRLTVLVVLSAMVPYALYPVPSFLTSSALDTSLAPSLSPLTLLFLTTGTTLCSASANALNMLYEPDTDSKMTRTRTRPLVRRLLTTKAAVLFAVGCGLAGTLALYFGVNPTVSFLGAANIALYAGAYTPLKRISAVNTWVGAIVGGIP 337          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COX10_YARLI (Protoheme IX farnesyltransferase, mitochondrial OS=Yarrowia lipolytica GN=COX10 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.253e-21
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  350 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            Y  L+K RL++LVV ++ + +AL +   + L  L +   GT + + SAN++N   E + D+ M RT  RP+  G ++   A T+A   G  GTA L +  N   A L ASN+ LY  +YT LK+ H +NTWVGA+VGAIP
Sbjct:  162 YVALTKPRLTVLVVLSAMSSYAL-TPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYDSMMTRTRGRPVVRGAVTPNQAFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYTTLKRKHIINTWVGAVVGAIP 300          
BLAST of CK936604 vs. ExPASy Swiss-Prot
Match: COXX_CYTH3 (Protoheme IX farnesyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ctaB PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.138e-21
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  344 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIP 769
            + Y++L+K RL+  V  +SG G+ L     +D   L     G   +  SAN +NQ+ E  +D  MKRT  RPLP G I+V+ A+  ++   +AGT +LA  + +    L+  +L++Y+F+YTPLK + P+  ++GA  GA P
Sbjct:    6 QAYFKLTKFRLTSTVAFSSGMGYILAERGQVDWLNLVLFLIGGFSITVSANIINQIIERESDKLMKRTASRPLPEGIITVQQAIITSALFLIAGTVILAVYSTLNALILSLISLVIYSFIYTPLKTVSPIAVFIGAFPGAFP 147          
The following BLAST results are available for this feature:
BLAST of CK936604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
COX10_MOUSE1.528e-2748.18Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_HUMAN6.422e-2647.10Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_PONAB1.095e-2547.45Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_EMENI1.582e-2438.55Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_ASPFU1.339e-2342.51Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_GIBZE2.284e-2343.40Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_SCHPO8.679e-2340.71Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_NEUCR3.298e-2243.05Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_YARLI1.253e-2141.43Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_CYTH32.138e-2136.62Protoheme IX farnesyltransferase OS=Cytophaga hutc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_D11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936604 ID=CK936604; Name=CK936604; organism=Citrus sinensis; type=EST; length=770bp
GGGGATTGCAGATCCCATTGCTCCCTTAAAAACAAAAAATAAAAATAAAA
ATAAATAAATAAATAAATGATCTGGAAAATTCATCAGCAATACTCGGTTT
CATGAAACCAAGCAAATTCAACTAATCCAGGGTTCACCAGAATATCAAAA
CATGTGGAGAAACGTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCA
ATCGGAGTCAACATTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAA
TGCCACGGTGTACGATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCAC
CGGTGCAGCTGCTGATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCT
ATTGGGAACTCTCCAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCA
GGAACTGGATTTGCATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACT
TTGTTGGACCTGTACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTC
TTAATCAGTTGTTTGAGATAAGCAATGATGCCAAAATGAAGCGAACAATG
CGAAGACCTCTGCCTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTG
GGCATCTTCTGTTGGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTA
ATATGTTGACAGCTGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTT
GTGTACACGCCATTGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGC
TATTGTTGGAGCTATTCCAC
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