CN186823

Overview
NameCN186823
Unique NameCN186823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186823 vs. ExPASy Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 73/275 (26.55%), Postives = 124/275 (45.09%), Query Frame = 3
Query:   12 FHKPYLIEDIWYAIWLLENQLPFFILPDLFALAAIEIPEQHENPTIITVTYEYFKGLEAVQGNRLKFPPYTEARVEHFLDFLRICHLPSSRNQEKQEGQ----QYRKGKT--VPSVTD-----------LHQAGVRFSL--SKSNDLFAIEFKNSTLHIPKLKLQLETESLFRNLIAFEQRHY-SENYINDYVFLIHHLVNTAKDVELLVQNG-IIENWLPDKEAASTLINNLSRGTTLLADRFYFSGLCKGLNDHCKRTCYKWRANLKQNYFNT 773
            F  P+L+  I   + LLENQ+PFF+L  L+  + I +     +  +  + + +FK     +G+   +  +   + +H LD +R   LP++   +K        Q  +GK+  VPSV             L   G++F L  SK + +  +  K + L IP+L+      S F N +AFEQ +  S N I  Y+  +  L+N  +DV  L  +  IIEN        S     +S+      D  Y + + KG+N++ K+      A  +  +F +
Sbjct:  163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGV-----SSDLNRIAFHFFKNPIDKEGS--YWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFES 430          
BLAST of CN186823 vs. ExPASy Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 41/145 (28.28%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  327 TVPSVTDLHQAGVRFSLSKSNDLFAIEFKNST--LHIPKLKLQLETESLFRNLIAFEQRHYSENYI-NDYVFLIHHLVNTAKDVELLVQNGIIENWLPDKEAASTLINNLSRGTTLLADRFYFSGLCKGLNDHCKRTCYKWRANL 752
            T+PSV+DLH+AGVRF  +   ++  + F +++   ++P + L + TE++ RNL+A+E  + S   +   Y  LI+ ++++ +DV LL + G++ + L   + A+ + N +S+   L    F    L K + D  +    +W+  +
Sbjct:  344 TIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGF----LDKTIEDVNRYYTGRWKVKI 484          
The following BLAST results are available for this feature:
BLAST of CN186823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3720_ARATH4.908e-1826.55UPF0481 protein At3g47200 OS=Arabidopsis thaliana ... [more]
Y3264_ARATH8.964e-1228.28Putative UPF0481 protein At3g02645 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186823 ID=CN186823; Name=CN186823; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTAATTTCATAAACCATATTTAATAGAGGATATATGGTATGCC
ATTTGGTTGCTTGAGAATCAGCTTCCTTTCTTCATTCTCCCGGATCTTTT
TGCTCTAGCTGCAATTGAAATCCCTGAACAACATGAAAATCCAACCATCA
TCACAGTCACATATGAGTATTTCAAGGGTTTAGAGGCGGTGCAAGGTAAT
CGGCTAAAATTCCCTCCTTACACTGAGGCTAGGGTAGAGCATTTCCTTGA
CTTTCTAAGGATTTGTCATCTACCTTCATCGAGGAATCAGGAAAAACAAG
AAGGTCAGCAATACCGCAAAGGTAAAACCGTACCGAGTGTGACTGATCTC
CACCAAGCTGGGGTCCGCTTCAGTTTGAGCAAGAGCAATGATTTGTTCGC
CATAGAATTCAAAAACAGTACATTGCATATTCCGAAACTCAAGCTGCAGC
TGGAAACGGAATCCTTATTTCGTAATCTCATTGCCTTTGAACAACGGCAT
TACTCAGAGAATTACATAAATGATTACGTGTTCCTTATTCATCATCTCGT
GAACACAGCGAAGGACGTCGAGTTGCTTGTTCAGAACGGAATCATTGAGA
ACTGGTTGCCGGATAAAGAGGCAGCGTCAACGCTTATAAATAACCTTTCT
AGAGGTACTACTCTGCTGGCTGATCGCTTCTATTTTTCTGGGCTATGCAA
AGGATTGAATGATCACTGCAAAAGAACGTGCTACAAATGGAGGGCAAACT
TGAAACAAAATTACTTCAATACT
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